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__abstractmethods__ (fastr.core.dimension.ForwardsDimensions attribute)
(fastr.core.dimension.HasDimensions attribute)
(fastr.core.interface.Interface attribute)
(fastr.core.ioplugin.IOPlugin attribute)
(fastr.core.samples.ContainsSamples attribute)
(fastr.core.samples.HasSamples attribute)
(fastr.core.samples.SampleCollection attribute)
(fastr.core.samples.SampleValue attribute)
(fastr.core.target.ProcessUsageCollection attribute)
(fastr.core.target.SubprocessBasedTarget attribute)
(fastr.core.target.Target attribute)
(fastr.datatypes.AnyFile attribute)
(fastr.datatypes.AnyType attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.DataType attribute)
(fastr.datatypes.DataTypeManager attribute)
(fastr.datatypes.Deferred attribute)
(fastr.datatypes.EnumType attribute)
(fastr.datatypes.TypeGroup attribute)
(fastr.datatypes.URLType attribute)
(fastr.datatypes.ValueType attribute)
(fastr.execution.basenoderun.BaseNodeRun attribute)
(fastr.execution.flownoderun.AdvancedFlowNodeRun attribute)
(fastr.execution.flownoderun.FlowNodeRun attribute)
(fastr.execution.inputoutputrun.AdvancedFlowOutputRun attribute)
(fastr.execution.inputoutputrun.BaseInputRun attribute)
(fastr.execution.inputoutputrun.InputRun attribute)
(fastr.execution.inputoutputrun.MacroOutputRun attribute)
(fastr.execution.inputoutputrun.OutputRun attribute)
(fastr.execution.inputoutputrun.SourceOutputRun attribute)
(fastr.execution.inputoutputrun.SubInputRun attribute)
(fastr.execution.inputoutputrun.SubOutputRun attribute)
(fastr.execution.linkrun.LinkRun attribute)
(fastr.execution.macronoderun.MacroNodeRun attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.execution.sinknoderun.SinkNodeRun attribute)
(fastr.execution.sourcenoderun.ConstantNodeRun attribute)
(fastr.execution.sourcenoderun.SourceNodeRun attribute)
(fastr.planning.inputgroup.InputGroup attribute)
(fastr.planning.inputgroupcombiner.BaseInputGroupCombiner attribute)
(fastr.planning.inputgroupcombiner.DefaultInputGroupCombiner attribute)
(fastr.planning.inputgroupcombiner.MergingInputGroupCombiner attribute)
(fastr.planning.inputoutput.AdvancedFlowOutput attribute)
(fastr.planning.inputoutput.BaseInput attribute)
(fastr.planning.inputoutput.BaseInputOutput attribute)
(fastr.planning.inputoutput.BaseOutput attribute)
(fastr.planning.inputoutput.Input attribute)
(fastr.planning.inputoutput.MacroInput attribute)
(fastr.planning.inputoutput.MacroOutput attribute)
(fastr.planning.inputoutput.Output attribute)
(fastr.planning.inputoutput.SourceOutput attribute)
(fastr.planning.inputoutput.SubInput attribute)
(fastr.planning.inputoutput.SubOutput attribute)
(fastr.planning.link.Link attribute)
(fastr.planning.node.AdvancedFlowNode attribute)
(fastr.planning.node.BaseNode attribute)
(fastr.planning.node.ConstantNode attribute)
(fastr.planning.node.FlowNode attribute)
(fastr.planning.node.MacroNode attribute)
(fastr.planning.node.Node attribute)
(fastr.planning.node.SinkNode attribute)
(fastr.planning.node.SourceNode attribute)
(fastr.plugins.BlockingExecution attribute)
(fastr.plugins.CommaSeperatedValueFile attribute)
(fastr.plugins.CrossValidation attribute)
(fastr.plugins.DRMAAExecution attribute)
(fastr.plugins.DockerTarget attribute)
(fastr.plugins.ElasticsearchReporter attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FileSystem attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.plugins.HTTPPlugin attribute)
(fastr.plugins.LinearExecution attribute)
(fastr.plugins.LocalBinaryTarget attribute)
(fastr.plugins.MacroTarget attribute)
(fastr.plugins.NipypeInterface attribute)
(fastr.plugins.Null attribute)
(fastr.plugins.PimReporter attribute)
(fastr.plugins.ProcessPoolExecution attribute)
(fastr.plugins.RQExecution attribute)
(fastr.plugins.Reference attribute)
(fastr.plugins.S3Filesystem attribute)
(fastr.plugins.SimpleReport attribute)
(fastr.plugins.SingularityTarget attribute)
(fastr.plugins.SlurmExecution attribute)
(fastr.plugins.StrongrExecution attribute)
(fastr.plugins.VirtualFileSystem attribute)
(fastr.plugins.VirtualFileSystemRegularExpression attribute)
(fastr.plugins.VirtualFileSystemValueList attribute)
(fastr.plugins.XNATStorage attribute)
(fastr.plugins.executionplugin.ExecutionPlugin attribute)
(fastr.plugins.managers.executionpluginmanager.ExecutionPluginManager attribute)
(fastr.plugins.managers.interfacemanager.InterfacePluginManager attribute)
(fastr.plugins.managers.iopluginmanager.IOPluginManager attribute)
(fastr.plugins.managers.networkmanager.NetworkManager attribute)
(fastr.plugins.managers.objectmanager.ObjectManager attribute)
(fastr.plugins.managers.pluginmanager.PluginManager attribute)
(fastr.plugins.managers.pluginmanager.PluginSubManager attribute)
(fastr.plugins.managers.pluginmanager.PluginsView attribute)
(fastr.plugins.managers.targetmanager.TargetManager attribute)
(fastr.plugins.managers.toolmanager.ToolManager attribute)
(fastr.plugins.reportingplugin.ReportingPlugin attribute)
(fastr.resources.datatypes.AnalyzeImageFile.AnalyzeImageFile attribute)
(fastr.resources.datatypes.Boolean.Boolean attribute)
(fastr.resources.datatypes.Directory.Directory attribute)
(fastr.resources.datatypes.FilePrefix.FilePrefix attribute)
(fastr.resources.datatypes.Float.Float attribute)
(fastr.resources.datatypes.ITKImageFile.ITKImageFile attribute)
(fastr.resources.datatypes.Int.Int attribute)
(fastr.resources.datatypes.JsonFile.JsonFile attribute)
(fastr.resources.datatypes.MetaImageFile.MetaImageFile attribute)
(fastr.resources.datatypes.NiftiImageFile.NiftiImageFile attribute)
(fastr.resources.datatypes.NiftiImageFileCompressed.NiftiImageFileCompressed attribute)
(fastr.resources.datatypes.NiftiImageFileUncompressed.NiftiImageFileUncompressed attribute)
(fastr.resources.datatypes.NrrdImageFile.NrrdImageFile attribute)
(fastr.resources.datatypes.Number.Number attribute)
(fastr.resources.datatypes.ProvNFile.ProvNFile attribute)
(fastr.resources.datatypes.String.String attribute)
(fastr.resources.datatypes.TifImageFile.TifImageFile attribute)
(fastr.resources.datatypes.TxtFile.TxtFile attribute)
(fastr.resources.datatypes.UnsignedInt.UnsignedInt attribute)
(fastr.resources.plugins.collectorplugins.jsoncollector.JsonCollector attribute)
(fastr.resources.plugins.collectorplugins.pathcollector.PathCollector attribute)
(fastr.resources.plugins.collectorplugins.stdoutcollector.StdoutCollector attribute)
(fastr.resources.plugins.executionplugins.blockingexecution.BlockingExecution attribute)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution attribute)
(fastr.resources.plugins.executionplugins.linearexecution.LinearExecution attribute)
(fastr.resources.plugins.executionplugins.processpoolexecution.ProcessPoolExecution attribute)
(fastr.resources.plugins.executionplugins.rqexecution.RQExecution attribute)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution attribute)
(fastr.resources.plugins.executionplugins.strongrexecution.StrongrExecution attribute)
(fastr.resources.plugins.flowplugins.crossvalidation.CrossValidation attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.CollectorPlugin attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.CollectorPluginManager attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.HiddenFieldMap attribute)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowInterface attribute)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowPlugin attribute)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowPluginManager attribute)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.HiddenFieldMap attribute)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.NipypeInterface attribute)
(fastr.resources.plugins.ioplugins.commaseperatedvaluefile.CommaSeperatedValueFile attribute)
(fastr.resources.plugins.ioplugins.filesystem.FileSystem attribute)
(fastr.resources.plugins.ioplugins.httpplugin.HTTPPlugin attribute)
(fastr.resources.plugins.ioplugins.null.Null attribute)
(fastr.resources.plugins.ioplugins.reference.Reference attribute)
(fastr.resources.plugins.ioplugins.s3filesystem.S3Filesystem attribute)
(fastr.resources.plugins.ioplugins.virtualfilesystem.VirtualFileSystem attribute)
(fastr.resources.plugins.ioplugins.virtualfilesystemregularexpression.VirtualFileSystemRegularExpression attribute)
(fastr.resources.plugins.ioplugins.virtualfilesystemvaluelist.VirtualFileSystemValueList attribute)
(fastr.resources.plugins.ioplugins.xnatstorage.XNATStorage attribute)
(fastr.resources.plugins.reportingplugins.elasticsearchreporter.ElasticsearchReporter attribute)
(fastr.resources.plugins.reportingplugins.pimreporter.BasePimAPI attribute)
(fastr.resources.plugins.reportingplugins.pimreporter.PimReporter attribute)
(fastr.resources.plugins.reportingplugins.simplereport.SimpleReport attribute)
(fastr.resources.plugins.targetplugins.dockertarget.DockerTarget attribute)
(fastr.resources.plugins.targetplugins.localbinarytarget.LocalBinaryTarget attribute)
(fastr.resources.plugins.targetplugins.macrotarget.MacroTarget attribute)
(fastr.resources.plugins.targetplugins.singularitytarget.SingularityTarget attribute)
__add__() (fastr.core.samples.SampleBaseId method)
(fastr.core.samples.SampleItemBase method)
(fastr.core.samples.SamplePayload method)
(fastr.core.samples.SampleValue method)
(fastr.helpers.configmanager.EmptyDefault method)
__bool__() (fastr.execution.networkrun.NetworkRun method)
__contains__() (fastr.core.samples.HasSamples method)
(fastr.core.samples.SampleCollection method)
(fastr.plugins.managers.objectmanager.ObjectManager method)
__dataschemafile__ (fastr.core.tool.Tool attribute)
(fastr.execution.linkrun.LinkRun attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.execution.sinknoderun.SinkNodeRun attribute)
(fastr.execution.sourcenoderun.ConstantNodeRun attribute)
(fastr.execution.sourcenoderun.SourceNodeRun attribute)
(fastr.planning.link.Link attribute)
(fastr.planning.network.Network attribute)
(fastr.planning.node.ConstantNode attribute)
(fastr.planning.node.Node attribute)
(fastr.planning.node.SinkNode attribute)
(fastr.planning.node.SourceNode attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface attribute)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowInterface attribute)
__del__() (fastr.helpers.lockfile.DirectoryLock method)
(fastr.plugins.executionplugin.ExecutionPlugin method)
__delitem__() (fastr.core.samples.SampleCollection method)
(fastr.core.samples.SampleValue method)
(fastr.helpers.configmanager.EmptyDefault method)
(fastr.plugins.managers.pluginmanager.PluginsView method)
__dict__ (fastr.core.cardinality.CardinalitySpec attribute)
(fastr.core.dimension.HasDimensions attribute)
(fastr.core.interface.InputSpec attribute)
(fastr.core.interface.InterfaceResult attribute)
(fastr.core.interface.OutputSpec attribute)
(fastr.core.provenance.Provenance attribute)
(fastr.core.samples.SampleBaseId attribute)
(fastr.core.samples.SampleCollection attribute)
(fastr.core.samples.SampleItemBase attribute)
(fastr.core.samples.SampleValue attribute)
(fastr.core.target.ProcessUsageCollection attribute)
(fastr.core.target.TargetResult attribute)
(fastr.core.version.Version attribute)
(fastr.core.vfs.VirtualFileSystem attribute)
(fastr.execution.environmentmodules.EnvironmentModules attribute)
(fastr.execution.networkanalyzer.NetworkAnalyzer attribute)
(fastr.execution.networkchunker.NetworkChunker attribute)
(fastr.helpers.classproperty.ClassPropertyDescriptor attribute)
(fastr.helpers.configmanager.Config attribute)
(fastr.helpers.configmanager.EmptyDefault attribute)
(fastr.helpers.filesynchelper.FileSyncHelper attribute)
(fastr.helpers.lockfile.DirectoryLock attribute)
(fastr.helpers.schematotable.SchemaPrinter attribute)
(fastr.plugins.managers.pluginmanager.PluginsView attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.HiddenFieldMap attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.PathDescription attribute)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.HiddenFieldMap attribute)
(fastr.resources.plugins.ioplugins.test.test_virtualfilesystem.TestVFS attribute)
(fastr.resources.plugins.reportingplugins.pimreporter.BasePimAPI attribute)
(fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 attribute)
(fastr.utils.cmd.upgrade.dummy_container attribute)
(fastr.web.api.Run attribute)
__dir__() (in module fastr.__init__)
__enter__() (fastr.core.target.Target method)
(fastr.helpers.lockfile.DirectoryLock method)
(fastr.plugins.DockerTarget method)
(fastr.plugins.LocalBinaryTarget method)
(fastr.plugins.SingularityTarget method)
(fastr.plugins.executionplugin.ExecutionPlugin method)
(fastr.resources.plugins.targetplugins.dockertarget.DockerTarget method)
(fastr.resources.plugins.targetplugins.localbinarytarget.LocalBinaryTarget method)
(fastr.resources.plugins.targetplugins.singularitytarget.SingularityTarget method)
__eq__() (fastr.api.ResourceLimit method)
(fastr.core.cardinality.AnyCardinalitySpec method)
(fastr.core.cardinality.AsCardinalitySpec method)
(fastr.core.cardinality.CardinalitySpec method)
(fastr.core.cardinality.ChoiceCardinalitySpec method)
(fastr.core.cardinality.IntCardinalitySpec method)
(fastr.core.cardinality.MaxCardinalitySpec method)
(fastr.core.cardinality.MinCardinalitySpec method)
(fastr.core.cardinality.RangeCardinalitySpec method)
(fastr.core.cardinality.ValueCardinalitySpec method)
(fastr.core.dimension.Dimension method)
(fastr.core.resourcelimit.ResourceLimit method)
(fastr.core.tool.Tool method)
(fastr.datatypes.BaseDataType method)
(fastr.datatypes.URLType method)
(fastr.execution.linkrun.LinkRun method)
(fastr.execution.networkrun.NetworkRun method)
(fastr.execution.noderun.NodeRun method)
(fastr.execution.sourcenoderun.SourceNodeRun method)
(fastr.planning.inputoutput.Input method)
(fastr.planning.inputoutput.Output method)
(fastr.planning.inputoutput.SubInput method)
(fastr.planning.inputoutput.SubOutput method)
(fastr.planning.link.Link method)
(fastr.planning.network.Network method)
(fastr.planning.node.MacroNode method)
(fastr.planning.node.Node method)
(fastr.plugins.FastrInterface method)
(fastr.plugins.FlowInterface method)
(fastr.plugins.NipypeInterface method)
(fastr.resources.datatypes.Directory.Directory method)
(fastr.resources.datatypes.MetaImageFile.MetaImageFile method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.ParameterDescription method)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowInterface method)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.NipypeInterface method)
__exit__() (fastr.core.target.Target method)
(fastr.helpers.lockfile.DirectoryLock method)
(fastr.plugins.DockerTarget method)
(fastr.plugins.LocalBinaryTarget method)
(fastr.plugins.SingularityTarget method)
(fastr.plugins.executionplugin.ExecutionPlugin method)
(fastr.resources.plugins.targetplugins.dockertarget.DockerTarget method)
(fastr.resources.plugins.targetplugins.localbinarytarget.LocalBinaryTarget method)
(fastr.resources.plugins.targetplugins.singularitytarget.SingularityTarget method)
__format__() (in module fastr.__init__)
__get__() (fastr.helpers.classproperty.ClassPropertyDescriptor method)
__getattr__() (fastr.helpers.lazy_module.LazyModule method)
__getitem__() (fastr.api.Output method)
(fastr.core.samples.ContainsSamples method)
(fastr.core.samples.HasSamples method)
(fastr.core.samples.SampleCollection method)
(fastr.core.samples.SampleValue method)
(fastr.core.target.ProcessUsageCollection method)
(fastr.execution.inputoutputrun.InputRun method)
(fastr.execution.inputoutputrun.OutputRun method)
(fastr.execution.inputoutputrun.SourceOutputRun method)
(fastr.execution.inputoutputrun.SubInputRun method)
(fastr.execution.inputoutputrun.SubOutputRun method)
(fastr.execution.linkrun.LinkRun method)
(fastr.execution.networkrun.NetworkRun method)
(fastr.helpers.configmanager.EmptyDefault method)
(fastr.planning.inputgroup.InputGroup method)
(fastr.planning.inputoutput.Input method)
(fastr.planning.inputoutput.Output method)
(fastr.planning.inputoutput.SubInput method)
(fastr.planning.network.Network method)
(fastr.plugins.managers.objectmanager.ObjectManager method)
(fastr.plugins.managers.pluginmanager.PluginsView method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.HiddenFieldMap method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.PathDescription method)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.HiddenFieldMap method)
(fastr.utils.cmd.upgrade.dummy_container method)
__getnewargs__() (fastr.core.samples.SampleItemBase method)
(fastr.core.target.SystemUsageInfo method)
(fastr.utils.cmd.upgrade.FastrNamespaceType method)
__getstate__() (fastr.api.ResourceLimit method)
(fastr.core.interface.Interface method)
(fastr.core.resourcelimit.ResourceLimit method)
(fastr.core.samples.SampleValue method)
(fastr.core.tool.Tool method)
(fastr.datatypes.BaseDataType method)
(fastr.datatypes.Deferred method)
(fastr.execution.inputoutputrun.InputRun method)
(fastr.execution.inputoutputrun.OutputRun method)
(fastr.execution.inputoutputrun.SubInputRun method)
(fastr.execution.inputoutputrun.SubOutputRun method)
(fastr.execution.job.Job method)
(fastr.execution.linkrun.LinkRun method)
(fastr.execution.macronoderun.MacroNodeRun method)
(fastr.execution.networkrun.NetworkRun method)
(fastr.execution.noderun.NodeRun method)
(fastr.execution.sinknoderun.SinkNodeRun method)
(fastr.execution.sourcenoderun.ConstantNodeRun method)
(fastr.execution.sourcenoderun.SourceNodeRun method)
(fastr.planning.inputoutput.BaseInputOutput method)
(fastr.planning.inputoutput.Input method)
(fastr.planning.inputoutput.Output method)
(fastr.planning.inputoutput.SubInput method)
(fastr.planning.inputoutput.SubOutput method)
(fastr.planning.link.Link method)
(fastr.planning.network.Network method)
(fastr.planning.node.ConstantNode method)
(fastr.planning.node.MacroNode method)
(fastr.planning.node.Node method)
(fastr.planning.node.SinkNode method)
(fastr.planning.node.SourceNode method)
(fastr.plugins.FastrInterface method)
(fastr.plugins.FlowInterface method)
(fastr.plugins.NipypeInterface method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.ParameterDescription method)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowInterface method)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.NipypeInterface method)
__hash__ (fastr.api.ResourceLimit attribute)
(fastr.core.cardinality.AnyCardinalitySpec attribute)
(fastr.core.cardinality.AsCardinalitySpec attribute)
(fastr.core.cardinality.CardinalitySpec attribute)
(fastr.core.cardinality.ChoiceCardinalitySpec attribute)
(fastr.core.cardinality.IntCardinalitySpec attribute)
(fastr.core.cardinality.MaxCardinalitySpec attribute)
(fastr.core.cardinality.MinCardinalitySpec attribute)
(fastr.core.cardinality.RangeCardinalitySpec attribute)
(fastr.core.cardinality.ValueCardinalitySpec attribute)
(fastr.core.dimension.Dimension attribute)
(fastr.core.resourcelimit.ResourceLimit attribute)
(fastr.core.tool.Tool attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.URLType attribute)
(fastr.execution.linkrun.LinkRun attribute)
(fastr.execution.networkrun.NetworkRun attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.execution.sourcenoderun.SourceNodeRun attribute)
(fastr.planning.inputoutput.Input attribute)
(fastr.planning.inputoutput.Output attribute)
(fastr.planning.inputoutput.SubInput attribute)
(fastr.planning.inputoutput.SubOutput attribute)
(fastr.planning.link.Link attribute)
(fastr.planning.network.Network attribute)
(fastr.planning.node.MacroNode attribute)
(fastr.planning.node.Node attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.plugins.NipypeInterface attribute)
(fastr.resources.datatypes.Directory.Directory attribute)
(fastr.resources.datatypes.MetaImageFile.MetaImageFile attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.ParameterDescription attribute)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowInterface attribute)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.NipypeInterface attribute)
__iadd__() (fastr.helpers.configmanager.EmptyDefault method)
__init__() (fastr.api.ResourceLimit method)
(fastr.core.cardinality.AsCardinalitySpec method)
(fastr.core.cardinality.CardinalitySpec method)
(fastr.core.cardinality.ChoiceCardinalitySpec method)
(fastr.core.cardinality.IntCardinalitySpec method)
(fastr.core.cardinality.MaxCardinalitySpec method)
(fastr.core.cardinality.MinCardinalitySpec method)
(fastr.core.cardinality.RangeCardinalitySpec method)
(fastr.core.cardinality.ValueCardinalitySpec method)
(fastr.core.dimension.Dimension method)
(fastr.core.interface.InterfaceResult method)
(fastr.core.ioplugin.IOPlugin method)
(fastr.core.provenance.Provenance method)
(fastr.core.resourcelimit.ResourceLimit method)
(fastr.core.samples.SampleCollection method)
(fastr.core.samples.SampleValue method)
(fastr.core.target.ProcessUsageCollection method)
(fastr.core.target.TargetResult method)
(fastr.core.tool.Tool method)
(fastr.core.vfs.VirtualFileSystem method)
(fastr.datatypes.BaseDataType method)
(fastr.datatypes.DataType method)
(fastr.datatypes.DataTypeManager method)
(fastr.datatypes.Deferred method)
(fastr.datatypes.EnumType method)
(fastr.datatypes.TypeGroup method)
(fastr.datatypes.URLType method)
(fastr.datatypes.ValueType method)
(fastr.exceptions.FastrError method)
(fastr.exceptions.FastrExecutableNotFoundError method)
(fastr.exceptions.FastrFileNotFound method)
(fastr.exceptions.FastrLockNotAcquired method)
(fastr.exceptions.FastrScriptNotFoundError method)
(fastr.exceptions.FastrSerializationError method)
(fastr.execution.environmentmodules.EnvironmentModules method)
(fastr.execution.inputoutputrun.BaseInputRun method)
(fastr.execution.inputoutputrun.InputRun method)
(fastr.execution.inputoutputrun.OutputRun method)
(fastr.execution.inputoutputrun.SourceOutputRun method)
(fastr.execution.inputoutputrun.SubInputRun method)
(fastr.execution.inputoutputrun.SubOutputRun method)
(fastr.execution.job.InlineJob method)
(fastr.execution.job.Job method)
(fastr.execution.job.JobState method)
(fastr.execution.job.SinkJob method)
(fastr.execution.linkrun.LinkRun method)
(fastr.execution.macronoderun.MacroNodeRun method)
(fastr.execution.networkchunker.DefaultNetworkChunker method)
(fastr.execution.networkrun.NetworkRun method)
(fastr.execution.noderun.NodeRun method)
(fastr.execution.sinknoderun.SinkNodeRun method)
(fastr.execution.sourcenoderun.ConstantNodeRun method)
(fastr.execution.sourcenoderun.SourceNodeRun method)
(fastr.helpers.classproperty.ClassPropertyDescriptor method)
(fastr.helpers.configmanager.Config method)
(fastr.helpers.configmanager.EmptyDefault method)
(fastr.helpers.filesynchelper.FileSyncHelper method)
(fastr.helpers.jsonschemaparser.FastrRefResolver method)
(fastr.helpers.lazy_module.LazyModule method)
(fastr.helpers.lockfile.DirectoryLock method)
(fastr.helpers.schematotable.SchemaPrinter method)
(fastr.planning.inputgroup.InputGroup method)
(fastr.planning.inputgroupcombiner.BaseInputGroupCombiner method)
(fastr.planning.inputgroupcombiner.MergingInputGroupCombiner method)
(fastr.planning.inputoutput.BaseInput method)
(fastr.planning.inputoutput.BaseInputOutput method)
(fastr.planning.inputoutput.BaseOutput method)
(fastr.planning.inputoutput.Input method)
(fastr.planning.inputoutput.Output method)
(fastr.planning.inputoutput.SourceOutput method)
(fastr.planning.inputoutput.SubInput method)
(fastr.planning.inputoutput.SubOutput method)
(fastr.planning.link.Link method)
(fastr.planning.network.Network method)
(fastr.planning.node.ConstantNode method)
(fastr.planning.node.FlowNode method)
(fastr.planning.node.MacroNode method)
(fastr.planning.node.Node method)
(fastr.planning.node.SinkNode method)
(fastr.planning.node.SourceNode method)
(fastr.plugins.BlockingExecution method)
(fastr.plugins.CommaSeperatedValueFile method)
(fastr.plugins.DRMAAExecution method)
(fastr.plugins.DockerTarget method)
(fastr.plugins.ElasticsearchReporter method)
(fastr.plugins.FastrInterface method)
(fastr.plugins.FileSystem method)
(fastr.plugins.FlowInterface method)
(fastr.plugins.HTTPPlugin method)
(fastr.plugins.LinearExecution method)
(fastr.plugins.LocalBinaryTarget method)
(fastr.plugins.MacroTarget method)
(fastr.plugins.NipypeInterface method)
(fastr.plugins.Null method)
(fastr.plugins.PimReporter method)
(fastr.plugins.ProcessPoolExecution method)
(fastr.plugins.RQExecution method)
(fastr.plugins.Reference method)
(fastr.plugins.S3Filesystem method)
(fastr.plugins.SingularityTarget method)
(fastr.plugins.SlurmExecution method)
(fastr.plugins.StrongrExecution method)
(fastr.plugins.VirtualFileSystemRegularExpression method)
(fastr.plugins.VirtualFileSystemValueList method)
(fastr.plugins.XNATStorage method)
(fastr.plugins.executionplugin.ExecutionPlugin method)
(fastr.plugins.managers.executionpluginmanager.ExecutionPluginManager method)
(fastr.plugins.managers.interfacemanager.InterfacePluginManager method)
(fastr.plugins.managers.iopluginmanager.IOPluginManager method)
(fastr.plugins.managers.objectmanager.ObjectManager method)
(fastr.plugins.managers.pluginmanager.PluginManager method)
(fastr.plugins.managers.pluginmanager.PluginSubManager method)
(fastr.plugins.managers.pluginmanager.PluginsView method)
(fastr.plugins.managers.targetmanager.TargetManager method)
(fastr.resources.plugins.collectorplugins.jsoncollector.JsonCollector method)
(fastr.resources.plugins.collectorplugins.pathcollector.PathCollector method)
(fastr.resources.plugins.collectorplugins.stdoutcollector.StdoutCollector method)
(fastr.resources.plugins.executionplugins.blockingexecution.BlockingExecution method)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution method)
(fastr.resources.plugins.executionplugins.linearexecution.LinearExecution method)
(fastr.resources.plugins.executionplugins.processpoolexecution.ProcessPoolExecution method)
(fastr.resources.plugins.executionplugins.rqexecution.RQExecution method)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution method)
(fastr.resources.plugins.executionplugins.strongrexecution.StrongrExecution method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.CollectorPlugin method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.CollectorPluginManager method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.HiddenFieldMap method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.InputParameterDescription method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.OutputParameterDescription method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.ParameterDescription method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.PathDescription method)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowInterface method)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowPluginManager method)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.HiddenFieldMap method)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.NipypeInterface method)
(fastr.resources.plugins.ioplugins.commaseperatedvaluefile.CommaSeperatedValueFile method)
(fastr.resources.plugins.ioplugins.filesystem.FileSystem method)
(fastr.resources.plugins.ioplugins.httpplugin.HTTPPlugin method)
(fastr.resources.plugins.ioplugins.null.Null method)
(fastr.resources.plugins.ioplugins.reference.Reference method)
(fastr.resources.plugins.ioplugins.s3filesystem.S3Filesystem method)
(fastr.resources.plugins.ioplugins.virtualfilesystemregularexpression.VirtualFileSystemRegularExpression method)
(fastr.resources.plugins.ioplugins.virtualfilesystemvaluelist.VirtualFileSystemValueList method)
(fastr.resources.plugins.ioplugins.xnatstorage.XNATStorage method)
(fastr.resources.plugins.reportingplugins.elasticsearchreporter.ElasticsearchReporter method)
(fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 method)
(fastr.resources.plugins.reportingplugins.pimreporter.PimReporter method)
(fastr.resources.plugins.targetplugins.dockertarget.DockerTarget method)
(fastr.resources.plugins.targetplugins.localbinarytarget.LocalBinaryTarget method)
(fastr.resources.plugins.targetplugins.macrotarget.MacroTarget method)
(fastr.resources.plugins.targetplugins.singularitytarget.SingularityTarget method)
(fastr.web.api.ObjectUrl method)
(fastr.web.api.Run method)
(fastr.web.api.SubUrl method)
__init_subclass__() (fastr.execution.basenoderun.BaseNodeRun class method)
(fastr.planning.node.BaseNode class method)
(in module fastr.__init__)
__iter__() (fastr.core.samples.HasSamples method)
(fastr.core.samples.SampleCollection method)
(fastr.core.samples.SampleValue method)
(fastr.planning.inputgroupcombiner.BaseInputGroupCombiner method)
(fastr.planning.inputoutput.BaseInputOutput method)
(fastr.plugins.managers.iopluginmanager.IOPluginManager method)
(fastr.plugins.managers.pluginmanager.PluginsView method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.CollectorPluginManager method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.HiddenFieldMap method)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.HiddenFieldMap method)
__keytransform__() (fastr.datatypes.DataTypeManager method)
(fastr.plugins.managers.iopluginmanager.IOPluginManager method)
(fastr.plugins.managers.objectmanager.ObjectManager method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.CollectorPluginManager method)
__len__() (fastr.core.samples.SampleCollection method)
(fastr.core.samples.SampleValue method)
(fastr.core.target.ProcessUsageCollection method)
(fastr.execution.inputoutputrun.SubOutputRun method)
(fastr.planning.inputoutput.SubOutput method)
(fastr.plugins.managers.pluginmanager.PluginsView method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.HiddenFieldMap method)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.HiddenFieldMap method)
__lshift__() (fastr.api.Input method)
(fastr.planning.inputoutput.BaseInput method)
__module__ (fastr.api.ResourceLimit attribute)
(fastr.core.cardinality.AnyCardinalitySpec attribute)
(fastr.core.cardinality.AsCardinalitySpec attribute)
(fastr.core.cardinality.CardinalitySpec attribute)
(fastr.core.cardinality.ChoiceCardinalitySpec attribute)
(fastr.core.cardinality.IntCardinalitySpec attribute)
(fastr.core.cardinality.MaxCardinalitySpec attribute)
(fastr.core.cardinality.MinCardinalitySpec attribute)
(fastr.core.cardinality.RangeCardinalitySpec attribute)
(fastr.core.cardinality.ValueCardinalitySpec attribute)
(fastr.core.dimension.Dimension attribute)
(fastr.core.dimension.ForwardsDimensions attribute)
(fastr.core.dimension.HasDimensions attribute)
(fastr.core.interface.InputSpec attribute)
(fastr.core.interface.Interface attribute)
(fastr.core.interface.InterfaceResult attribute)
(fastr.core.interface.OutputSpec attribute)
(fastr.core.ioplugin.IOPlugin attribute)
(fastr.core.provenance.Provenance attribute)
(fastr.core.resourcelimit.ResourceLimit attribute)
(fastr.core.samples.ContainsSamples attribute)
(fastr.core.samples.HasSamples attribute)
(fastr.core.samples.SampleBaseId attribute)
(fastr.core.samples.SampleCollection attribute)
(fastr.core.samples.SampleId attribute)
(fastr.core.samples.SampleIndex attribute)
(fastr.core.samples.SampleItem attribute)
(fastr.core.samples.SampleItemBase attribute)
(fastr.core.samples.SamplePayload attribute)
(fastr.core.samples.SampleValue attribute)
(fastr.core.target.ProcessUsageCollection attribute)
(fastr.core.target.SubprocessBasedTarget attribute)
(fastr.core.target.SystemUsageInfo attribute)
(fastr.core.target.Target attribute)
(fastr.core.target.TargetResult attribute)
(fastr.core.tool.Tool attribute)
(fastr.core.version.Version attribute)
(fastr.core.vfs.VirtualFileSystem attribute)
(fastr.datatypes.AnyFile attribute)
(fastr.datatypes.AnyType attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.DataType attribute)
(fastr.datatypes.DataTypeManager attribute)
(fastr.datatypes.Deferred attribute)
(fastr.datatypes.EnumType attribute)
(fastr.datatypes.TypeGroup attribute)
(fastr.datatypes.URLType attribute)
(fastr.datatypes.ValueType attribute)
(fastr.exceptions.FastrAttributeError attribute)
(fastr.exceptions.FastrCannotChangeAttributeError attribute)
(fastr.exceptions.FastrCardinalityError attribute)
(fastr.exceptions.FastrCollectorError attribute)
(fastr.exceptions.FastrDataTypeFileNotReadable attribute)
(fastr.exceptions.FastrDataTypeMismatchError attribute)
(fastr.exceptions.FastrDataTypeNotAvailableError attribute)
(fastr.exceptions.FastrDataTypeNotInstantiableError attribute)
(fastr.exceptions.FastrDataTypeValueError attribute)
(fastr.exceptions.FastrError attribute)
(fastr.exceptions.FastrErrorInSubprocess attribute)
(fastr.exceptions.FastrExecutableNotFoundError attribute)
(fastr.exceptions.FastrExecutionError attribute)
(fastr.exceptions.FastrFileNotFound attribute)
(fastr.exceptions.FastrIOError attribute)
(fastr.exceptions.FastrImportError attribute)
(fastr.exceptions.FastrIndexError attribute)
(fastr.exceptions.FastrIndexNonexistent attribute)
(fastr.exceptions.FastrKeyError attribute)
(fastr.exceptions.FastrLockNotAcquired attribute)
(fastr.exceptions.FastrLookupError attribute)
(fastr.exceptions.FastrMountUnknownError attribute)
(fastr.exceptions.FastrNetworkMismatchError attribute)
(fastr.exceptions.FastrNetworkUnknownError attribute)
(fastr.exceptions.FastrNoValidTargetError attribute)
(fastr.exceptions.FastrNodeAreadyPreparedError attribute)
(fastr.exceptions.FastrNodeNotPreparedError attribute)
(fastr.exceptions.FastrNodeNotValidError attribute)
(fastr.exceptions.FastrNotExecutableError attribute)
(fastr.exceptions.FastrNotImplementedError attribute)
(fastr.exceptions.FastrOSError attribute)
(fastr.exceptions.FastrObjectUnknownError attribute)
(fastr.exceptions.FastrOptionalModuleNotAvailableError attribute)
(fastr.exceptions.FastrOutputValidationError attribute)
(fastr.exceptions.FastrParentMismatchError attribute)
(fastr.exceptions.FastrPluginCapabilityNotImplemented attribute)
(fastr.exceptions.FastrPluginNotAvailable attribute)
(fastr.exceptions.FastrPluginNotLoaded attribute)
(fastr.exceptions.FastrResultFileNotFound attribute)
(fastr.exceptions.FastrScriptNotFoundError attribute)
(fastr.exceptions.FastrSerializationError attribute)
(fastr.exceptions.FastrSerializationIgnoreDefaultError attribute)
(fastr.exceptions.FastrSerializationInvalidDataError attribute)
(fastr.exceptions.FastrSerializationMethodError attribute)
(fastr.exceptions.FastrSinkDataUnavailableError attribute)
(fastr.exceptions.FastrSizeInvalidError attribute)
(fastr.exceptions.FastrSizeMismatchError attribute)
(fastr.exceptions.FastrSizeUnknownError attribute)
(fastr.exceptions.FastrSourceDataUnavailableError attribute)
(fastr.exceptions.FastrStateError attribute)
(fastr.exceptions.FastrSubprocessNotFinished attribute)
(fastr.exceptions.FastrToolNotAvailableError attribute)
(fastr.exceptions.FastrToolTargetNotFound attribute)
(fastr.exceptions.FastrToolUnknownError attribute)
(fastr.exceptions.FastrToolVersionError attribute)
(fastr.exceptions.FastrTypeError attribute)
(fastr.exceptions.FastrUnknownURLSchemeError attribute)
(fastr.exceptions.FastrValueError attribute)
(fastr.exceptions.FastrVersionInvalidError attribute)
(fastr.exceptions.FastrVersionMismatchError attribute)
(fastr.execution.basenoderun.BaseNodeRun attribute)
(fastr.execution.environmentmodules.EnvironmentModules attribute)
(fastr.execution.environmentmodules.ModuleSystem attribute)
(fastr.execution.flownoderun.AdvancedFlowNodeRun attribute)
(fastr.execution.flownoderun.FlowNodeRun attribute)
(fastr.execution.inputoutputrun.AdvancedFlowOutputRun attribute)
(fastr.execution.inputoutputrun.BaseInputRun attribute)
(fastr.execution.inputoutputrun.InputRun attribute)
(fastr.execution.inputoutputrun.MacroOutputRun attribute)
(fastr.execution.inputoutputrun.OutputRun attribute)
(fastr.execution.inputoutputrun.SourceOutputRun attribute)
(fastr.execution.inputoutputrun.SubInputRun attribute)
(fastr.execution.inputoutputrun.SubOutputRun attribute)
(fastr.execution.job.InlineJob attribute)
(fastr.execution.job.Job attribute)
(fastr.execution.job.JobCleanupLevel attribute)
(fastr.execution.job.JobState attribute)
(fastr.execution.job.SinkJob attribute)
(fastr.execution.job.SourceJob attribute)
(fastr.execution.linkrun.LinkRun attribute)
(fastr.execution.macronoderun.MacroNodeRun attribute)
(fastr.execution.networkanalyzer.DefaultNetworkAnalyzer attribute)
(fastr.execution.networkanalyzer.NetworkAnalyzer attribute)
(fastr.execution.networkchunker.DefaultNetworkChunker attribute)
(fastr.execution.networkchunker.NetworkChunker attribute)
(fastr.execution.networkrun.NetworkRun attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.execution.sinknoderun.SinkNodeRun attribute)
(fastr.execution.sourcenoderun.ConstantNodeRun attribute)
(fastr.execution.sourcenoderun.SourceNodeRun attribute)
(fastr.helpers.classproperty.ClassPropertyDescriptor attribute)
(fastr.helpers.configmanager.Config attribute)
(fastr.helpers.configmanager.EmptyDefault attribute)
(fastr.helpers.events.EventType attribute)
(fastr.helpers.events.FastrLogEventHandler attribute)
(fastr.helpers.filesynchelper.FileSyncHelper attribute)
(fastr.helpers.jsonschemaparser.FastrRefResolver attribute)
(fastr.helpers.lazy_module.LazyModule attribute)
(fastr.helpers.lockfile.DirectoryLock attribute)
(fastr.helpers.schematotable.SchemaPrinter attribute)
(fastr.planning.inputgroup.InputGroup attribute)
(fastr.planning.inputgroupcombiner.BaseInputGroupCombiner attribute)
(fastr.planning.inputgroupcombiner.DefaultInputGroupCombiner attribute)
(fastr.planning.inputgroupcombiner.MergingInputGroupCombiner attribute)
(fastr.planning.inputoutput.AdvancedFlowOutput attribute)
(fastr.planning.inputoutput.BaseInput attribute)
(fastr.planning.inputoutput.BaseInputOutput attribute)
(fastr.planning.inputoutput.BaseOutput attribute)
(fastr.planning.inputoutput.Input attribute)
(fastr.planning.inputoutput.MacroInput attribute)
(fastr.planning.inputoutput.MacroOutput attribute)
(fastr.planning.inputoutput.Output attribute)
(fastr.planning.inputoutput.SourceOutput attribute)
(fastr.planning.inputoutput.SubInput attribute)
(fastr.planning.inputoutput.SubOutput attribute)
(fastr.planning.link.Link attribute)
(fastr.planning.network.Network attribute)
(fastr.planning.node.AdvancedFlowNode attribute)
(fastr.planning.node.BaseNode attribute)
(fastr.planning.node.ConstantNode attribute)
(fastr.planning.node.FlowNode attribute)
(fastr.planning.node.InputDict attribute)
(fastr.planning.node.MacroNode attribute)
(fastr.planning.node.Node attribute)
(fastr.planning.node.OutputDict attribute)
(fastr.planning.node.SinkNode attribute)
(fastr.planning.node.SourceNode attribute)
(fastr.plugins.BlockingExecution attribute)
(fastr.plugins.CommaSeperatedValueFile attribute)
(fastr.plugins.CrossValidation attribute)
(fastr.plugins.DRMAAExecution attribute)
(fastr.plugins.DockerTarget attribute)
(fastr.plugins.ElasticsearchReporter attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FileSystem attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.plugins.HTTPPlugin attribute)
(fastr.plugins.LinearExecution attribute)
(fastr.plugins.LocalBinaryTarget attribute)
(fastr.plugins.MacroTarget attribute)
(fastr.plugins.NipypeInterface attribute)
(fastr.plugins.Null attribute)
(fastr.plugins.PimReporter attribute)
(fastr.plugins.ProcessPoolExecution attribute)
(fastr.plugins.RQExecution attribute)
(fastr.plugins.Reference attribute)
(fastr.plugins.S3Filesystem attribute)
(fastr.plugins.SimpleReport attribute)
(fastr.plugins.SingularityTarget attribute)
(fastr.plugins.SlurmExecution attribute)
(fastr.plugins.StrongrExecution attribute)
(fastr.plugins.VirtualFileSystem attribute)
(fastr.plugins.VirtualFileSystemRegularExpression attribute)
(fastr.plugins.VirtualFileSystemValueList attribute)
(fastr.plugins.XNATStorage attribute)
(fastr.plugins.executionplugin.ExecutionPlugin attribute)
(fastr.plugins.executionplugin.JobAction attribute)
(fastr.plugins.managers.executionpluginmanager.ExecutionPluginManager attribute)
(fastr.plugins.managers.interfacemanager.InterfacePluginManager attribute)
(fastr.plugins.managers.iopluginmanager.IOPluginManager attribute)
(fastr.plugins.managers.networkmanager.NetworkManager attribute)
(fastr.plugins.managers.objectmanager.ObjectManager attribute)
(fastr.plugins.managers.pluginmanager.PluginManager attribute)
(fastr.plugins.managers.pluginmanager.PluginSubManager attribute)
(fastr.plugins.managers.pluginmanager.PluginsView attribute)
(fastr.plugins.managers.targetmanager.TargetManager attribute)
(fastr.plugins.managers.toolmanager.ToolManager attribute)
(fastr.plugins.reportingplugin.ReportingPlugin attribute)
(fastr.resources.datatypes.AnalyzeImageFile.AnalyzeImageFile attribute)
(fastr.resources.datatypes.Boolean.Boolean attribute)
(fastr.resources.datatypes.Directory.Directory attribute)
(fastr.resources.datatypes.FilePrefix.FilePrefix attribute)
(fastr.resources.datatypes.Float.Float attribute)
(fastr.resources.datatypes.ITKImageFile.ITKImageFile attribute)
(fastr.resources.datatypes.Int.Int attribute)
(fastr.resources.datatypes.JsonFile.JsonFile attribute)
(fastr.resources.datatypes.MetaImageFile.MetaImageFile attribute)
(fastr.resources.datatypes.NiftiImageFile.NiftiImageFile attribute)
(fastr.resources.datatypes.NiftiImageFileCompressed.NiftiImageFileCompressed attribute)
(fastr.resources.datatypes.NiftiImageFileUncompressed.NiftiImageFileUncompressed attribute)
(fastr.resources.datatypes.NrrdImageFile.NrrdImageFile attribute)
(fastr.resources.datatypes.Number.Number attribute)
(fastr.resources.datatypes.ProvNFile.ProvNFile attribute)
(fastr.resources.datatypes.String.String attribute)
(fastr.resources.datatypes.TifImageFile.TifImageFile attribute)
(fastr.resources.datatypes.TxtFile.TxtFile attribute)
(fastr.resources.datatypes.UnsignedInt.UnsignedInt attribute)
(fastr.resources.plugins.collectorplugins.jsoncollector.JsonCollector attribute)
(fastr.resources.plugins.collectorplugins.pathcollector.PathCollector attribute)
(fastr.resources.plugins.collectorplugins.stdoutcollector.StdoutCollector attribute)
(fastr.resources.plugins.executionplugins.blockingexecution.BlockingExecution attribute)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution attribute)
(fastr.resources.plugins.executionplugins.drmaaexecution.FastrDRMAANotFoundError attribute)
(fastr.resources.plugins.executionplugins.drmaaexecution.FastrDRMAANotFunctionalError attribute)
(fastr.resources.plugins.executionplugins.linearexecution.LinearExecution attribute)
(fastr.resources.plugins.executionplugins.processpoolexecution.ProcessPoolExecution attribute)
(fastr.resources.plugins.executionplugins.rqexecution.RQExecution attribute)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution attribute)
(fastr.resources.plugins.executionplugins.strongrexecution.StrongrExecution attribute)
(fastr.resources.plugins.flowplugins.crossvalidation.CrossValidation attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.CollectorPlugin attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.CollectorPluginManager attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.HiddenFieldMap attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.InputParameterDescription attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.OutputParameterDescription attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.ParameterDescription attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.PathDescription attribute)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowInterface attribute)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowPlugin attribute)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowPluginManager attribute)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.HiddenFieldMap attribute)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.NipypeInterface attribute)
(fastr.resources.plugins.ioplugins.commaseperatedvaluefile.CommaSeperatedValueFile attribute)
(fastr.resources.plugins.ioplugins.filesystem.FileSystem attribute)
(fastr.resources.plugins.ioplugins.httpplugin.HTTPPlugin attribute)
(fastr.resources.plugins.ioplugins.null.Null attribute)
(fastr.resources.plugins.ioplugins.reference.Reference attribute)
(fastr.resources.plugins.ioplugins.s3filesystem.S3Filesystem attribute)
(fastr.resources.plugins.ioplugins.test.test_virtualfilesystem.TestVFS attribute)
(fastr.resources.plugins.ioplugins.virtualfilesystem.VirtualFileSystem attribute)
(fastr.resources.plugins.ioplugins.virtualfilesystemregularexpression.VirtualFileSystemRegularExpression attribute)
(fastr.resources.plugins.ioplugins.virtualfilesystemvaluelist.VirtualFileSystemValueList attribute)
(fastr.resources.plugins.ioplugins.xnatstorage.XNATStorage attribute)
(fastr.resources.plugins.reportingplugins.elasticsearchreporter.ElasticsearchReporter attribute)
(fastr.resources.plugins.reportingplugins.pimreporter.BasePimAPI attribute)
(fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 attribute)
(fastr.resources.plugins.reportingplugins.pimreporter.PimReporter attribute)
(fastr.resources.plugins.reportingplugins.simplereport.SimpleReport attribute)
(fastr.resources.plugins.targetplugins.dockertarget.DockerTarget attribute)
(fastr.resources.plugins.targetplugins.localbinarytarget.LocalBinaryTarget attribute)
(fastr.resources.plugins.targetplugins.macrotarget.MacroTarget attribute)
(fastr.resources.plugins.targetplugins.singularitytarget.SingularityTarget attribute)
(fastr.utils.cmd.upgrade.FastrNamespaceType attribute)
(fastr.utils.cmd.upgrade.dummy_container attribute)
(fastr.web.api.NetworkApi attribute)
(fastr.web.api.NetworkListApi attribute)
(fastr.web.api.ObjectUrl attribute)
(fastr.web.api.Run attribute)
(fastr.web.api.RunApi attribute)
(fastr.web.api.RunListApi attribute)
(fastr.web.api.StatusApi attribute)
(fastr.web.api.SubUrl attribute)
(fastr.web.api.ToolApi attribute)
(fastr.web.api.ToolListApi attribute)
__ne__() (fastr.api.ResourceLimit method)
(fastr.core.cardinality.CardinalitySpec method)
(fastr.core.dimension.Dimension method)
(fastr.core.resourcelimit.ResourceLimit method)
(fastr.datatypes.BaseDataType method)
(fastr.execution.networkrun.NetworkRun method)
(fastr.planning.inputoutput.BaseInputOutput method)
(fastr.planning.network.Network method)
(fastr.planning.node.Node method)
__new__() (fastr.core.interface.InputSpec static method)
(fastr.core.interface.OutputSpec static method)
(fastr.core.samples.SampleBaseId static method)
(fastr.core.samples.SampleItem static method)
(fastr.core.samples.SampleItemBase static method)
(fastr.core.samples.SamplePayload static method)
(fastr.core.target.SystemUsageInfo static method)
(fastr.core.version.Version static method)
(fastr.datatypes.TypeGroup static method)
(fastr.utils.cmd.upgrade.FastrNamespaceType static method)
(in module fastr.__init__)
__radd__() (fastr.core.samples.SampleBaseId method)
(fastr.core.samples.SampleValue method)
(fastr.helpers.configmanager.EmptyDefault method)
__reduce__() (in module fastr.__init__)
__reduce_ex__() (fastr.datatypes.BaseDataType method)
(fastr.datatypes.EnumType method)
(in module fastr.__init__)
__repr__() (fastr.core.cardinality.CardinalitySpec method)
(fastr.core.dimension.Dimension method)
(fastr.core.samples.SampleBaseId method)
(fastr.core.samples.SampleCollection method)
(fastr.core.samples.SampleIndex method)
(fastr.core.samples.SampleItemBase method)
(fastr.core.samples.SampleValue method)
(fastr.core.target.SystemUsageInfo method)
(fastr.core.tool.Tool method)
(fastr.core.version.Version method)
(fastr.datatypes.BaseDataType method)
(fastr.datatypes.Deferred method)
(fastr.exceptions.FastrError method)
(fastr.exceptions.FastrSerializationError method)
(fastr.execution.environmentmodules.EnvironmentModules method)
(fastr.execution.job.Job method)
(fastr.execution.job.SinkJob method)
(fastr.execution.job.SourceJob method)
(fastr.execution.linkrun.LinkRun method)
(fastr.execution.networkrun.NetworkRun method)
(fastr.execution.noderun.NodeRun method)
(fastr.helpers.configmanager.Config method)
(fastr.helpers.lazy_module.LazyModule method)
(fastr.planning.inputoutput.BaseInputOutput method)
(fastr.planning.link.Link method)
(fastr.planning.network.Network method)
(fastr.planning.node.Node method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.PathDescription method)
(fastr.utils.cmd.upgrade.FastrNamespaceType method)
__rrshift__() (fastr.api.Input method)
(fastr.planning.inputoutput.BaseInput method)
__schema_type__ (fastr.web.api.ObjectUrl attribute)
(fastr.web.api.SubUrl attribute)
__setitem__() (fastr.core.samples.ContainsSamples method)
(fastr.core.samples.SampleCollection method)
(fastr.core.samples.SampleValue method)
(fastr.execution.inputoutputrun.OutputRun method)
(fastr.execution.inputoutputrun.SourceOutputRun method)
(fastr.execution.inputoutputrun.SubOutputRun method)
(fastr.helpers.configmanager.EmptyDefault method)
(fastr.planning.inputgroup.InputGroup method)
(fastr.planning.inputoutput.Input method)
(fastr.planning.node.InputDict method)
(fastr.planning.node.OutputDict method)
(fastr.plugins.managers.pluginmanager.PluginManager method)
(fastr.plugins.managers.pluginmanager.PluginsView method)
__setstate__() (fastr.api.ResourceLimit method)
(fastr.core.interface.Interface method)
(fastr.core.resourcelimit.ResourceLimit method)
(fastr.core.samples.SampleValue method)
(fastr.core.tool.Tool method)
(fastr.datatypes.BaseDataType method)
(fastr.datatypes.Deferred method)
(fastr.execution.inputoutputrun.InputRun method)
(fastr.execution.inputoutputrun.OutputRun method)
(fastr.execution.inputoutputrun.SubInputRun method)
(fastr.execution.inputoutputrun.SubOutputRun method)
(fastr.execution.job.Job method)
(fastr.execution.linkrun.LinkRun method)
(fastr.execution.macronoderun.MacroNodeRun method)
(fastr.execution.networkrun.NetworkRun method)
(fastr.execution.noderun.NodeRun method)
(fastr.execution.sinknoderun.SinkNodeRun method)
(fastr.execution.sourcenoderun.ConstantNodeRun method)
(fastr.execution.sourcenoderun.SourceNodeRun method)
(fastr.planning.inputoutput.BaseInputOutput method)
(fastr.planning.inputoutput.Input method)
(fastr.planning.inputoutput.Output method)
(fastr.planning.inputoutput.SubInput method)
(fastr.planning.inputoutput.SubOutput method)
(fastr.planning.link.Link method)
(fastr.planning.network.Network method)
(fastr.planning.node.ConstantNode method)
(fastr.planning.node.MacroNode method)
(fastr.planning.node.Node method)
(fastr.planning.node.SinkNode method)
(fastr.planning.node.SourceNode method)
(fastr.plugins.FastrInterface method)
(fastr.plugins.FlowInterface method)
(fastr.plugins.NipypeInterface method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.OutputParameterDescription method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.ParameterDescription method)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowInterface method)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.NipypeInterface method)
__sizeof__() (in module fastr.__init__)
__slotnames__ (fastr.web.api.ObjectUrl attribute)
__slots__ (fastr.api.ResourceLimit attribute)
(fastr.core.dimension.Dimension attribute)
(fastr.core.resourcelimit.ResourceLimit attribute)
(fastr.core.target.SystemUsageInfo attribute)
(fastr.utils.cmd.upgrade.FastrNamespaceType attribute)
__str__() (fastr.core.cardinality.AnyCardinalitySpec method)
(fastr.core.cardinality.AsCardinalitySpec method)
(fastr.core.cardinality.CardinalitySpec method)
(fastr.core.cardinality.ChoiceCardinalitySpec method)
(fastr.core.cardinality.IntCardinalitySpec method)
(fastr.core.cardinality.MaxCardinalitySpec method)
(fastr.core.cardinality.MinCardinalitySpec method)
(fastr.core.cardinality.RangeCardinalitySpec method)
(fastr.core.cardinality.ValueCardinalitySpec method)
(fastr.core.samples.SampleBaseId method)
(fastr.core.samples.SampleIndex method)
(fastr.core.tool.Tool method)
(fastr.core.version.Version method)
(fastr.datatypes.BaseDataType method)
(fastr.exceptions.FastrError method)
(fastr.exceptions.FastrExecutableNotFoundError method)
(fastr.exceptions.FastrScriptNotFoundError method)
(fastr.exceptions.FastrSerializationError method)
(fastr.execution.inputoutputrun.InputRun method)
(fastr.execution.inputoutputrun.OutputRun method)
(fastr.execution.inputoutputrun.SubInputRun method)
(fastr.execution.inputoutputrun.SubOutputRun method)
(fastr.execution.noderun.NodeRun method)
(fastr.helpers.schematotable.SchemaPrinter method)
(fastr.planning.inputoutput.Input method)
(fastr.planning.inputoutput.Output method)
(fastr.planning.inputoutput.SubInput method)
(fastr.planning.inputoutput.SubOutput method)
(fastr.planning.node.Node method)
(fastr.resources.datatypes.Boolean.Boolean method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.PathDescription method)
__subclasshook__() (in module fastr.__init__)
__updatefunc__() (fastr.planning.inputgroup.InputGroup method)
__updatetriggers__ (fastr.planning.inputgroup.InputGroup attribute)
__weakref__ (fastr.core.cardinality.CardinalitySpec attribute)
(fastr.core.dimension.HasDimensions attribute)
(fastr.core.interface.InterfaceResult attribute)
(fastr.core.provenance.Provenance attribute)
(fastr.core.samples.SampleCollection attribute)
(fastr.core.samples.SampleValue attribute)
(fastr.core.target.ProcessUsageCollection attribute)
(fastr.core.target.TargetResult attribute)
(fastr.core.vfs.VirtualFileSystem attribute)
(fastr.exceptions.FastrError attribute)
(fastr.exceptions.FastrIOError attribute)
(fastr.exceptions.FastrImportError attribute)
(fastr.exceptions.FastrOSError attribute)
(fastr.execution.environmentmodules.EnvironmentModules attribute)
(fastr.execution.networkanalyzer.NetworkAnalyzer attribute)
(fastr.execution.networkchunker.NetworkChunker attribute)
(fastr.helpers.classproperty.ClassPropertyDescriptor attribute)
(fastr.helpers.configmanager.Config attribute)
(fastr.helpers.configmanager.EmptyDefault attribute)
(fastr.helpers.filesynchelper.FileSyncHelper attribute)
(fastr.helpers.lockfile.DirectoryLock attribute)
(fastr.helpers.schematotable.SchemaPrinter attribute)
(fastr.plugins.managers.pluginmanager.PluginsView attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.HiddenFieldMap attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.PathDescription attribute)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.HiddenFieldMap attribute)
(fastr.resources.plugins.ioplugins.test.test_virtualfilesystem.TestVFS attribute)
(fastr.resources.plugins.reportingplugins.pimreporter.BasePimAPI attribute)
(fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 attribute)
(fastr.utils.cmd.upgrade.dummy_container attribute)
(fastr.web.api.Run attribute)
A
abort() (fastr.execution.networkrun.NetworkRun method)
(fastr.web.api.Run method)
abstract (fastr.core.vfs.VirtualFileSystem attribute)
acquire() (fastr.helpers.lockfile.DirectoryLock method)
action() (fastr.datatypes.DataType method)
(fastr.resources.datatypes.Directory.Directory method)
ACTIONS (fastr.resources.plugins.interfaceplugins.fastrinterface.OutputParameterDescription attribute)
activate() (fastr.plugins.ElasticsearchReporter method)
(fastr.plugins.PimReporter method)
(fastr.plugins.reportingplugin.ReportingPlugin method)
(fastr.resources.plugins.reportingplugins.elasticsearchreporter.ElasticsearchReporter method)
(fastr.resources.plugins.reportingplugins.pimreporter.PimReporter method)
activity() (fastr.core.provenance.Provenance method)
add_link() (fastr.planning.network.Network method)
add_node() (fastr.planning.network.Network method)
add_parser_doc_link() (in module fastr.utils.cmd)
add_stepid() (fastr.planning.network.Network method)
AdvancedFlowNode (class in fastr.planning.node)
AdvancedFlowNodeRun (class in fastr.execution.flownoderun)
AdvancedFlowOutput (class in fastr.planning.inputoutput)
AdvancedFlowOutputRun (class in fastr.execution.inputoutputrun)
agent() (fastr.core.provenance.Provenance method)
aggregate() (fastr.core.target.ProcessUsageCollection method)
all (fastr.execution.job.JobCleanupLevel attribute)
analyze_network() (fastr.execution.networkanalyzer.DefaultNetworkAnalyzer method)
(fastr.execution.networkanalyzer.NetworkAnalyzer method)
AnalyzeImageFile (class in fastr.resources.datatypes.AnalyzeImageFile)
any_of_draft4() (in module fastr.helpers.jsonschemaparser)
AnyCardinalitySpec (class in fastr.core.cardinality)
AnyFile (class in fastr.datatypes)
AnyType (class in fastr.datatypes)
append() (fastr.api.Input method)
(fastr.core.target.ProcessUsageCollection method)
(fastr.helpers.configmanager.EmptyDefault method)
(fastr.planning.inputoutput.Input method)
as_dict() (fastr.core.target.TargetResult method)
AsCardinalitySpec (class in fastr.core.cardinality)
asdict() (fastr.helpers.configmanager.EmptyDefault method)
aslist() (fastr.helpers.configmanager.EmptyDefault method)
authors (fastr.core.tool.Tool attribute)
automatic (fastr.execution.inputoutputrun.OutputRun attribute)
(fastr.planning.inputoutput.BaseOutput attribute)
avail() (fastr.execution.environmentmodules.EnvironmentModules method)
avail_modules (fastr.execution.environmentmodules.EnvironmentModules attribute)
B
BaseDataType (class in fastr.datatypes)
BaseInput (class in fastr.planning.inputoutput)
BaseInputGroupCombiner (class in fastr.planning.inputgroupcombiner)
BaseInputOutput (class in fastr.planning.inputoutput)
BaseInputRun (class in fastr.execution.inputoutputrun)
basename (fastr.resources.plugins.interfaceplugins.fastrinterface.PathDescription attribute)
basename() (in module fastr.data.url)
BaseNode (class in fastr.planning.node)
BaseNodeRun (class in fastr.execution.basenoderun)
BaseOutput (class in fastr.planning.inputoutput)
BasePimAPI (class in fastr.resources.plugins.reportingplugins.pimreporter)
blocking (fastr.execution.flownoderun.FlowNodeRun attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.planning.inputoutput.BaseOutput attribute)
(fastr.planning.node.FlowNode attribute)
(fastr.planning.node.Node attribute)
BlockingExecution (class in fastr.plugins)
(class in fastr.resources.plugins.executionplugins.blockingexecution)
Boolean (class in fastr.resources.datatypes.Boolean)
build (fastr.core.version.Version attribute)
C
calculate_execution_cardinality() (fastr.core.cardinality.AsCardinalitySpec method)
(fastr.core.cardinality.CardinalitySpec method)
(fastr.core.cardinality.IntCardinalitySpec method)
(fastr.core.cardinality.ValueCardinalitySpec method)
calculate_job_cardinality() (fastr.core.cardinality.AsCardinalitySpec method)
(fastr.core.cardinality.CardinalitySpec method)
(fastr.core.cardinality.IntCardinalitySpec method)
(fastr.core.cardinality.ValueCardinalitySpec method)
calculate_planning_cardinality() (fastr.core.cardinality.AsCardinalitySpec method)
(fastr.core.cardinality.CardinalitySpec method)
(fastr.core.cardinality.IntCardinalitySpec method)
call_subprocess() (fastr.core.target.SubprocessBasedTarget method)
cancel (fastr.plugins.executionplugin.JobAction attribute)
cancel_job() (fastr.plugins.executionplugin.ExecutionPlugin method)
cancelled (fastr.execution.job.JobState attribute)
CANCELS_DEPENDENCIES (fastr.plugins.DRMAAExecution attribute)
(fastr.plugins.executionplugin.ExecutionPlugin attribute)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution attribute)
cardinality (fastr.core.samples.SampleItemBase attribute)
cardinality() (fastr.execution.inputoutputrun.InputRun method)
(fastr.execution.inputoutputrun.OutputRun method)
(fastr.execution.inputoutputrun.SourceOutputRun method)
(fastr.execution.inputoutputrun.SubInputRun method)
(fastr.execution.inputoutputrun.SubOutputRun method)
(fastr.execution.linkrun.LinkRun method)
(fastr.planning.inputoutput.BaseInputOutput method)
(fastr.planning.inputoutput.Input method)
(fastr.planning.inputoutput.Output method)
(fastr.planning.inputoutput.SourceOutput method)
(fastr.planning.inputoutput.SubInput method)
(fastr.planning.inputoutput.SubOutput method)
(fastr.planning.link.Link method)
cardinality_from_nargs() (in module fastr.utils.cmd.extract_argparse)
CardinalitySpec (class in fastr.core.cardinality)
cast() (fastr.core.samples.SampleValue method)
cast_to_type() (fastr.execution.job.Job static method)
check_cardinality() (fastr.planning.inputoutput.BaseInput method)
(fastr.planning.inputoutput.BaseInputOutput method)
check_finished() (fastr.plugins.RQExecution method)
(fastr.plugins.StrongrExecution method)
(fastr.resources.plugins.executionplugins.rqexecution.RQExecution method)
(fastr.resources.plugins.executionplugins.strongrexecution.StrongrExecution method)
check_id() (fastr.execution.networkrun.NetworkRun method)
(fastr.planning.network.Network method)
check_input_id() (fastr.plugins.FastrInterface method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface method)
check_job_requirements() (fastr.plugins.executionplugin.ExecutionPlugin method)
check_job_status() (fastr.plugins.executionplugin.ExecutionPlugin method)
check_network() (in module fastr.utils.cmd.test)
check_networks() (in module fastr.utils.cmd.test)
check_output_id() (fastr.plugins.FastrInterface method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface method)
check_tool() (in module fastr.utils.cmd.test)
check_tools() (in module fastr.utils.cmd.test)
checksum() (fastr.datatypes.BaseDataType method)
(fastr.datatypes.Deferred method)
(fastr.datatypes.URLType method)
(fastr.resources.datatypes.FilePrefix.FilePrefix method)
(fastr.resources.datatypes.JsonFile.JsonFile method)
(fastr.resources.datatypes.MetaImageFile.MetaImageFile method)
(fastr.resources.datatypes.NiftiImageFileCompressed.NiftiImageFileCompressed method)
(in module fastr.helpers.checksum)
checksum_directory() (in module fastr.helpers.checksum)
ChoiceCardinalitySpec (class in fastr.core.cardinality)
chunck_network() (fastr.execution.networkchunker.DefaultNetworkChunker method)
(fastr.execution.networkchunker.NetworkChunker method)
cite (fastr.core.tool.Tool attribute)
classproperty() (in module fastr.helpers.classproperty)
ClassPropertyDescriptor (class in fastr.helpers.classproperty)
clean() (fastr.execution.job.Job method)
clean_free_jobs() (fastr.plugins.executionplugin.ExecutionPlugin method)
cleanup() (fastr.core.ioplugin.IOPlugin method)
(fastr.plugins.BlockingExecution method)
(fastr.plugins.DRMAAExecution method)
(fastr.plugins.LinearExecution method)
(fastr.plugins.ProcessPoolExecution method)
(fastr.plugins.RQExecution method)
(fastr.plugins.S3Filesystem method)
(fastr.plugins.SlurmExecution method)
(fastr.plugins.StrongrExecution method)
(fastr.plugins.XNATStorage method)
(fastr.plugins.executionplugin.ExecutionPlugin method)
(fastr.plugins.managers.iopluginmanager.IOPluginManager method)
(fastr.resources.plugins.executionplugins.blockingexecution.BlockingExecution method)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution method)
(fastr.resources.plugins.executionplugins.linearexecution.LinearExecution method)
(fastr.resources.plugins.executionplugins.processpoolexecution.ProcessPoolExecution method)
(fastr.resources.plugins.executionplugins.rqexecution.RQExecution method)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution method)
(fastr.resources.plugins.executionplugins.strongrexecution.StrongrExecution method)
(fastr.resources.plugins.ioplugins.s3filesystem.S3Filesystem method)
(fastr.resources.plugins.ioplugins.xnatstorage.XNATStorage method)
clear() (fastr.execution.environmentmodules.EnvironmentModules method)
(fastr.planning.inputoutput.Input method)
clear_version() (in module fastr.version)
collapse (fastr.api.Link attribute)
(fastr.execution.linkrun.LinkRun attribute)
(fastr.planning.link.Link attribute)
collapse_indexes (fastr.execution.linkrun.LinkRun attribute)
(fastr.planning.link.Link attribute)
collect_errors() (fastr.plugins.FastrInterface static method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface static method)
collect_input_argument_provenance() (fastr.core.provenance.Provenance method)
collect_jobs() (fastr.plugins.DRMAAExecution method)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution method)
collect_provenance() (fastr.core.provenance.Provenance method)
(fastr.execution.job.InlineJob method)
(fastr.execution.job.Job method)
(fastr.execution.job.SourceJob method)
collect_results() (fastr.plugins.FastrInterface method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.CollectorPlugin method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface method)
collector_plugin_type (fastr.plugins.FastrInterface attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface attribute)
CollectorPlugin (class in fastr.resources.plugins.interfaceplugins.fastrinterface)
CollectorPluginManager (class in fastr.resources.plugins.interfaceplugins.fastrinterface)
collectors (fastr.plugins.FastrInterface attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface attribute)
combine() (fastr.core.samples.SampleItemBase static method)
combine_dimensions() (fastr.core.dimension.ForwardsDimensions method)
command (fastr.core.tool.Tool attribute)
COMMAND_DUMP (fastr.execution.job.Job attribute)
command_version (fastr.core.tool.Tool attribute)
commandfile (fastr.execution.job.Job attribute)
commandurl (fastr.execution.job.Job attribute)
CommaSeperatedValueFile (class in fastr.plugins)
(class in fastr.resources.plugins.ioplugins.commaseperatedvaluefile)
compare_execution_dir() (in module fastr.utils.compare)
compare_job_dirs() (in module fastr.utils.compare)
compare_job_output_data() (in module fastr.utils.compare)
compare_output_data() (fastr.core.tool.Tool static method)
compare_set() (in module fastr.utils.compare)
compare_value_dict_item() (in module fastr.utils.compare)
compare_value_list() (in module fastr.utils.compare)
Config (class in fastr.helpers.configmanager)
config (in module fastr.helpers)
configuration_fields (fastr.plugins.DRMAAExecution attribute)
(fastr.plugins.ElasticsearchReporter attribute)
(fastr.plugins.PimReporter attribute)
(fastr.plugins.ProcessPoolExecution attribute)
(fastr.plugins.RQExecution attribute)
(fastr.plugins.SlurmExecution attribute)
(fastr.plugins.StrongrExecution attribute)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution attribute)
(fastr.resources.plugins.executionplugins.processpoolexecution.ProcessPoolExecution attribute)
(fastr.resources.plugins.executionplugins.rqexecution.RQExecution attribute)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution attribute)
(fastr.resources.plugins.executionplugins.strongrexecution.StrongrExecution attribute)
(fastr.resources.plugins.reportingplugins.elasticsearchreporter.ElasticsearchReporter attribute)
(fastr.resources.plugins.reportingplugins.pimreporter.PimReporter attribute)
connect() (fastr.plugins.XNATStorage method)
(fastr.resources.plugins.ioplugins.xnatstorage.XNATStorage method)
constantlist (fastr.execution.networkrun.NetworkRun attribute)
ConstantNode (class in fastr.planning.node)
ConstantNodeRun (class in fastr.execution.sourcenoderun)
container (fastr.plugins.DockerTarget attribute)
(fastr.resources.plugins.targetplugins.dockertarget.DockerTarget attribute)
ContainsSamples (class in fastr.core.samples)
content() (fastr.datatypes.URLType class method)
(fastr.resources.datatypes.AnalyzeImageFile.AnalyzeImageFile class method)
(fastr.resources.datatypes.MetaImageFile.MetaImageFile class method)
copy() (fastr.api.ResourceLimit method)
(fastr.core.dimension.Dimension method)
(fastr.core.resourcelimit.ResourceLimit method)
copy_file_dir() (fastr.core.vfs.VirtualFileSystem static method)
cores (fastr.api.ResourceLimit attribute)
(fastr.core.resourcelimit.ResourceLimit attribute)
cpu_percent (fastr.core.target.SystemUsageInfo attribute)
create_cardinality() (in module fastr.core.cardinality)
create_constant() (fastr.api.Network method)
(fastr.planning.network.Network method)
create_enumtype() (fastr.datatypes.DataTypeManager method)
create_ioplugin_tool() (fastr.plugins.managers.iopluginmanager.IOPluginManager static method)
create_job() (fastr.execution.noderun.NodeRun method)
(fastr.execution.sinknoderun.SinkNodeRun method)
(fastr.execution.sourcenoderun.SourceNodeRun method)
create_job_data() (fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 method)
create_link() (fastr.api.Network method)
(fastr.planning.network.Network method)
create_link_from() (fastr.planning.inputoutput.BaseInput method)
create_macro() (fastr.api.Network method)
(fastr.planning.network.Network method)
create_native_spec() (fastr.plugins.DRMAAExecution method)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution method)
create_network() (fastr.api method)
(in module fastr.api)
create_network_copy() (fastr.api method)
(in module fastr.api)
create_network_parser() (in module fastr.utils.cmd.run)
create_node() (fastr.api.Network method)
(fastr.planning.network.Network method)
create_payload() (fastr.execution.job.Job method)
(fastr.execution.job.SinkJob method)
create_reference() (fastr.core.tool.Tool method)
(fastr.planning.network.Network method)
create_rest_table() (in module fastr.helpers.rest_generation)
create_sink() (fastr.api.Network method)
(fastr.planning.network.Network method)
create_source() (fastr.api.Network method)
(fastr.planning.network.Network method)
create_vfs_url() (in module fastr.data.url)
create_zip() (in module fastr.utils.cmd.dump)
created (fastr.execution.job.JobState attribute)
createobj() (fastr.execution.linkrun.LinkRun class method)
(fastr.execution.noderun.NodeRun class method)
(fastr.planning.link.Link class method)
(fastr.planning.node.Node class method)
CrossValidation (class in fastr.plugins)
(class in fastr.resources.plugins.flowplugins.crossvalidation)
current_jobs (fastr.plugins.DRMAAExecution attribute)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution attribute)
D
data (fastr.core.samples.SampleItemBase attribute)
(fastr.execution.sourcenoderun.ConstantNodeRun attribute)
(fastr.planning.node.ConstantNode attribute)
(fastr.plugins.managers.pluginmanager.PluginSubManager attribute)
data_uri() (fastr.core.provenance.Provenance static method)
DataType (class in fastr.datatypes)
datatype (fastr.execution.inputoutputrun.InputRun attribute)
(fastr.execution.inputoutputrun.OutputRun attribute)
(fastr.execution.inputoutputrun.SubOutputRun attribute)
(fastr.execution.sinknoderun.SinkNodeRun attribute)
(fastr.execution.sourcenoderun.SourceNodeRun attribute)
(fastr.planning.inputoutput.BaseInputOutput attribute)
(fastr.planning.inputoutput.Input attribute)
(fastr.planning.inputoutput.Output attribute)
(fastr.planning.inputoutput.SubOutput attribute)
(fastr.planning.node.SinkNode attribute)
(fastr.planning.node.SourceNode attribute)
datatype_from_type() (in module fastr.utils.cmd.extract_argparse)
DataTypeManager (class in fastr.datatypes)
date_version_matcher (fastr.core.version.Version attribute)
deactivate() (fastr.plugins.reportingplugin.ReportingPlugin method)
debug (fastr.helpers.configmanager.Config attribute)
DEFAULT_FIELDS (fastr.helpers.configmanager.Config attribute)
DEFAULT_TARGET_CLASS (fastr.core.tool.Tool attribute)
DefaultInputGroupCombiner (class in fastr.planning.inputgroupcombiner)
DefaultNetworkAnalyzer (class in fastr.execution.networkanalyzer)
DefaultNetworkChunker (class in fastr.execution.networkchunker)
Deferred (class in fastr.datatypes)
delete() (fastr.web.api.RunApi method)
descend() (fastr.helpers.schematotable.SchemaPrinter method)
description (fastr.core.tool.Tool attribute)
(fastr.datatypes.AnyFile attribute)
(fastr.datatypes.AnyType attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.EnumType attribute)
(fastr.execution.inputoutputrun.SubInputRun attribute)
(fastr.planning.inputoutput.BaseInputOutput attribute)
(fastr.planning.inputoutput.SubInput attribute)
(fastr.resources.datatypes.AnalyzeImageFile.AnalyzeImageFile attribute)
(fastr.resources.datatypes.Boolean.Boolean attribute)
(fastr.resources.datatypes.Directory.Directory attribute)
(fastr.resources.datatypes.FilePrefix.FilePrefix attribute)
(fastr.resources.datatypes.Float.Float attribute)
(fastr.resources.datatypes.ITKImageFile.ITKImageFile attribute)
(fastr.resources.datatypes.Int.Int attribute)
(fastr.resources.datatypes.JsonFile.JsonFile attribute)
(fastr.resources.datatypes.MetaImageFile.MetaImageFile attribute)
(fastr.resources.datatypes.NiftiImageFile.NiftiImageFile attribute)
(fastr.resources.datatypes.NiftiImageFileCompressed.NiftiImageFileCompressed attribute)
(fastr.resources.datatypes.NiftiImageFileUncompressed.NiftiImageFileUncompressed attribute)
(fastr.resources.datatypes.NrrdImageFile.NrrdImageFile attribute)
(fastr.resources.datatypes.Number.Number attribute)
(fastr.resources.datatypes.ProvNFile.ProvNFile attribute)
(fastr.resources.datatypes.String.String attribute)
(fastr.resources.datatypes.TifImageFile.TifImageFile attribute)
(fastr.resources.datatypes.TxtFile.TxtFile attribute)
(fastr.resources.datatypes.UnsignedInt.UnsignedInt attribute)
description_type (fastr.planning.inputoutput.BaseInput attribute)
(fastr.planning.inputoutput.BaseInputOutput attribute)
(fastr.planning.inputoutput.BaseOutput attribute)
destroy() (fastr.execution.linkrun.LinkRun method)
(fastr.planning.link.Link method)
dicteq() (in module fastr.utils.dicteq)
diffdict() (in module fastr.utils.dicteq)
diffobj() (in module fastr.utils.dicteq)
diffobj_str() (in module fastr.utils.dicteq)
Dimension (class in fastr.core.dimension)
dimensionality (fastr.core.samples.SampleItemBase attribute)
dimensions (fastr.core.dimension.ForwardsDimensions attribute)
(fastr.core.dimension.HasDimensions attribute)
(fastr.core.samples.ContainsSamples attribute)
(fastr.core.samples.SampleCollection attribute)
(fastr.execution.inputoutputrun.InputRun attribute)
(fastr.execution.inputoutputrun.MacroOutputRun attribute)
(fastr.execution.inputoutputrun.SourceOutputRun attribute)
(fastr.execution.inputoutputrun.SubInputRun attribute)
(fastr.execution.linkrun.LinkRun attribute)
(fastr.planning.inputgroup.InputGroup attribute)
(fastr.planning.inputgroupcombiner.BaseInputGroupCombiner attribute)
(fastr.planning.inputoutput.AdvancedFlowOutput attribute)
(fastr.planning.inputoutput.Input attribute)
(fastr.planning.inputoutput.MacroOutput attribute)
(fastr.planning.inputoutput.Output attribute)
(fastr.planning.inputoutput.SubInput attribute)
(fastr.planning.link.Link attribute)
(fastr.planning.node.FlowNode attribute)
(fastr.planning.node.Node attribute)
(fastr.planning.node.SourceNode attribute)
dimnames (fastr.core.dimension.HasDimensions attribute)
(fastr.execution.flownoderun.FlowNodeRun attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.execution.sourcenoderun.SourceNodeRun attribute)
(fastr.planning.node.Node attribute)
dir_list() (in module fastr.helpers.clear_pycs)
Directory (class in fastr.resources.datatypes.Directory)
directory (fastr.resources.plugins.interfaceplugins.fastrinterface.PathDescription attribute)
directory() (in module fastr.utils.cmd.test)
DirectoryLock (class in fastr.helpers.lockfile)
dirname() (in module fastr.data.url)
dirurl() (in module fastr.data.url)
dispatch_callbacks() (fastr.plugins.DRMAAExecution method)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution method)
doc() (in module fastr.web.views)
docker_api (fastr.resources.plugins.targetplugins.dockertarget.DockerTarget attribute)
DockerTarget (class in fastr.plugins)
(class in fastr.resources.plugins.targetplugins.dockertarget)
done (fastr.execution.job.JobState attribute)
dot_extension (fastr.datatypes.BaseDataType attribute)
draw() (fastr.api.Network method)
(fastr.planning.link.Link method)
(fastr.planning.network.Network method)
(fastr.planning.node.ConstantNode method)
(fastr.planning.node.MacroNode method)
(fastr.planning.node.Node method)
(fastr.planning.node.SinkNode method)
(fastr.planning.node.SourceNode method)
draw_id() (fastr.planning.node.Node method)
draw_link_target() (fastr.planning.node.MacroNode method)
(fastr.planning.node.Node method)
draw_network() (fastr.planning.network.Network method)
DRMAAExecution (class in fastr.plugins)
(class in fastr.resources.plugins.executionplugins.drmaaexecution)
dummy_container (class in fastr.utils.cmd.upgrade)
dump() (in module fastr.helpers.xmltodict)
dumps() (in module fastr.helpers.xmltodict)
DYNAMIC_LIBRARY_PATH_DICT (fastr.plugins.LocalBinaryTarget attribute)
(fastr.resources.plugins.targetplugins.localbinarytarget.LocalBinaryTarget attribute)
E
elasticsearch_update_status() (fastr.plugins.ElasticsearchReporter method)
(fastr.resources.plugins.reportingplugins.elasticsearchreporter.ElasticsearchReporter method)
ElasticsearchReporter (class in fastr.plugins)
(class in fastr.resources.plugins.reportingplugins.elasticsearchreporter)
emit() (fastr.helpers.events.FastrLogEventHandler method)
emit_event() (in module fastr.helpers.events)
empty (fastr.planning.inputgroup.InputGroup attribute)
EmptyDefault (class in fastr.helpers.configmanager)
endpoint (fastr.web.api.NetworkApi attribute)
(fastr.web.api.NetworkListApi attribute)
(fastr.web.api.RunApi attribute)
(fastr.web.api.RunListApi attribute)
(fastr.web.api.StatusApi attribute)
(fastr.web.api.ToolApi attribute)
(fastr.web.api.ToolListApi attribute)
ensure_tmp_dir() (fastr.execution.job.Job method)
entity() (fastr.core.provenance.Provenance method)
EnumType (class in fastr.datatypes)
EnvironmentModules (class in fastr.execution.environmentmodules)
envmod (fastr.execution.environmentmodules.ModuleSystem attribute)
EventType (class in fastr.helpers.events)
examplesdir (fastr.helpers.configmanager.Config attribute)
excerpt() (fastr.exceptions.FastrError method)
exec_worker() (fastr.plugins.LinearExecution method)
(fastr.resources.plugins.executionplugins.linearexecution.LinearExecution method)
execute() (fastr.api.Network method)
(fastr.core.interface.Interface method)
(fastr.core.tool.Tool method)
(fastr.execution.flownoderun.AdvancedFlowNodeRun method)
(fastr.execution.job.Job method)
(fastr.execution.macronoderun.MacroNodeRun method)
(fastr.execution.networkrun.NetworkRun method)
(fastr.execution.noderun.NodeRun method)
(fastr.execution.sinknoderun.SinkNodeRun method)
(fastr.execution.sourcenoderun.ConstantNodeRun method)
(fastr.execution.sourcenoderun.SourceNodeRun method)
(fastr.planning.network.Network method)
(fastr.plugins.CrossValidation static method)
(fastr.plugins.FastrInterface method)
(fastr.plugins.FlowInterface method)
(fastr.plugins.NipypeInterface method)
(fastr.resources.plugins.flowplugins.crossvalidation.CrossValidation static method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface method)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowInterface method)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowPlugin method)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.NipypeInterface method)
execute_job() (in module fastr.execution.executionscript)
execution_done (fastr.execution.job.JobState attribute)
execution_failed (fastr.execution.job.JobState attribute)
execution_finished() (fastr.execution.networkrun.NetworkRun method)
execution_plugin (fastr.helpers.configmanager.Config attribute)
ExecutionPlugin (class in fastr.plugins.executionplugin)
ExecutionPluginManager (class in fastr.plugins.managers.executionpluginmanager)
executionscript (fastr.helpers.configmanager.Config attribute)
expand (fastr.api.Link attribute)
(fastr.execution.linkrun.LinkRun attribute)
(fastr.planning.link.Link attribute)
expand() (fastr.core.samples.SampleIndex method)
expand_url() (fastr.core.ioplugin.IOPlugin method)
(fastr.core.vfs.VirtualFileSystem method)
(fastr.plugins.CommaSeperatedValueFile method)
(fastr.plugins.S3Filesystem method)
(fastr.plugins.VirtualFileSystemRegularExpression method)
(fastr.plugins.VirtualFileSystemValueList method)
(fastr.plugins.XNATStorage method)
(fastr.plugins.managers.iopluginmanager.IOPluginManager method)
(fastr.resources.plugins.ioplugins.commaseperatedvaluefile.CommaSeperatedValueFile method)
(fastr.resources.plugins.ioplugins.s3filesystem.S3Filesystem method)
(fastr.resources.plugins.ioplugins.virtualfilesystemregularexpression.VirtualFileSystemRegularExpression method)
(fastr.resources.plugins.ioplugins.virtualfilesystemvaluelist.VirtualFileSystemValueList method)
(fastr.resources.plugins.ioplugins.xnatstorage.XNATStorage method)
expanding (fastr.core.interface.Interface attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.plugins.NipypeInterface attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface attribute)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowInterface attribute)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.NipypeInterface attribute)
extend() (fastr.helpers.configmanager.EmptyDefault method)
(in module fastr.helpers.jsonschemaparser)
extension (fastr.datatypes.BaseDataType attribute)
(fastr.resources.datatypes.AnalyzeImageFile.AnalyzeImageFile attribute)
(fastr.resources.datatypes.Directory.Directory attribute)
(fastr.resources.datatypes.FilePrefix.FilePrefix attribute)
(fastr.resources.datatypes.JsonFile.JsonFile attribute)
(fastr.resources.datatypes.MetaImageFile.MetaImageFile attribute)
(fastr.resources.datatypes.NiftiImageFileCompressed.NiftiImageFileCompressed attribute)
(fastr.resources.datatypes.NiftiImageFileUncompressed.NiftiImageFileUncompressed attribute)
(fastr.resources.datatypes.NrrdImageFile.NrrdImageFile attribute)
(fastr.resources.datatypes.ProvNFile.ProvNFile attribute)
(fastr.resources.datatypes.TifImageFile.TifImageFile attribute)
(fastr.resources.datatypes.TxtFile.TxtFile attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.PathDescription attribute)
extra (fastr.core.version.Version attribute)
extra_string (fastr.core.version.Version attribute)
extract_argparser() (in module fastr.utils.cmd.extract_argparse)
extrainfofile (fastr.execution.job.Job attribute)
extrainfourl (fastr.execution.job.Job attribute)
F
failed (fastr.execution.job.JobState attribute)
failed_annotations (fastr.core.samples.SampleItemBase attribute)
fastr.__init__ (module)
fastr.api (module)
fastr.core (module)
fastr.core.cardinality (module)
fastr.core.dimension (module)
fastr.core.interface (module)
fastr.core.ioplugin (module)
fastr.core.provenance (module)
fastr.core.resourcelimit (module)
fastr.core.samples (module)
fastr.core.target (module)
fastr.core.test (module)
fastr.core.tool (module)
fastr.core.version (module)
fastr.core.vfs (module)
fastr.data (module)
fastr.data.url (module)
fastr.datatypes (module)
fastr.exceptions (module)
fastr.execution (module)
fastr.execution.basenoderun (module)
fastr.execution.environmentmodules (module)
fastr.execution.executionscript (module)
fastr.execution.flownoderun (module)
fastr.execution.inputoutputrun (module)
fastr.execution.job (module)
fastr.execution.linkrun (module)
fastr.execution.macronoderun (module)
fastr.execution.networkanalyzer (module)
fastr.execution.networkchunker (module)
fastr.execution.networkrun (module)
fastr.execution.noderun (module)
fastr.execution.sinknoderun (module)
fastr.execution.sourcenoderun (module)
fastr.helpers (module)
fastr.helpers.checksum (module)
fastr.helpers.classproperty (module)
fastr.helpers.clear_pycs (module)
fastr.helpers.configmanager (module)
fastr.helpers.events (module)
fastr.helpers.filesynchelper (module)
fastr.helpers.iohelpers (module)
fastr.helpers.jsonschemaparser (module)
fastr.helpers.lazy_module (module)
fastr.helpers.lockfile (module)
fastr.helpers.procutils (module)
fastr.helpers.rest_generation (module)
fastr.helpers.schematotable (module)
fastr.helpers.sysinfo (module)
fastr.helpers.xmltodict (module)
fastr.planning (module)
fastr.planning.inputgroup (module)
fastr.planning.inputgroupcombiner (module)
fastr.planning.inputoutput (module)
fastr.planning.link (module)
fastr.planning.network (module)
fastr.planning.node (module)
fastr.plugins (module)
fastr.plugins.executionplugin (module)
fastr.plugins.managers (module)
fastr.plugins.managers.executionpluginmanager (module)
fastr.plugins.managers.interfacemanager (module)
fastr.plugins.managers.iopluginmanager (module)
fastr.plugins.managers.networkmanager (module)
fastr.plugins.managers.objectmanager (module)
fastr.plugins.managers.pluginmanager (module)
fastr.plugins.managers.targetmanager (module)
fastr.plugins.managers.toolmanager (module)
fastr.plugins.reportingplugin (module)
fastr.resources (module)
fastr.resources.datatypes (module)
fastr.resources.datatypes.AnalyzeImageFile (module)
fastr.resources.datatypes.Boolean (module)
fastr.resources.datatypes.Directory (module)
fastr.resources.datatypes.FilePrefix (module)
fastr.resources.datatypes.Float (module)
fastr.resources.datatypes.Int (module)
fastr.resources.datatypes.ITKImageFile (module)
fastr.resources.datatypes.JsonFile (module)
fastr.resources.datatypes.MetaImageFile (module)
fastr.resources.datatypes.NiftiImageFile (module)
fastr.resources.datatypes.NiftiImageFileCompressed (module)
fastr.resources.datatypes.NiftiImageFileUncompressed (module)
fastr.resources.datatypes.NrrdImageFile (module)
fastr.resources.datatypes.Number (module)
fastr.resources.datatypes.ProvNFile (module)
fastr.resources.datatypes.String (module)
fastr.resources.datatypes.TifImageFile (module)
fastr.resources.datatypes.TxtFile (module)
fastr.resources.datatypes.UnsignedInt (module)
fastr.resources.plugins.collectorplugins (module)
fastr.resources.plugins.collectorplugins.jsoncollector (module)
fastr.resources.plugins.collectorplugins.pathcollector (module)
fastr.resources.plugins.collectorplugins.stdoutcollector (module)
fastr.resources.plugins.executionplugins (module)
fastr.resources.plugins.executionplugins.blockingexecution (module)
fastr.resources.plugins.executionplugins.drmaaexecution (module)
fastr.resources.plugins.executionplugins.linearexecution (module)
fastr.resources.plugins.executionplugins.processpoolexecution (module)
fastr.resources.plugins.executionplugins.rqexecution (module)
fastr.resources.plugins.executionplugins.slurmexecution (module)
fastr.resources.plugins.executionplugins.strongrexecution (module)
fastr.resources.plugins.flowplugins.crossvalidation (module)
fastr.resources.plugins.interfaceplugins.fastrinterface (module)
fastr.resources.plugins.interfaceplugins.flowinterface (module)
fastr.resources.plugins.interfaceplugins.nipypeinterface (module)
fastr.resources.plugins.ioplugins (module)
fastr.resources.plugins.ioplugins.commaseperatedvaluefile (module)
fastr.resources.plugins.ioplugins.filesystem (module)
fastr.resources.plugins.ioplugins.httpplugin (module)
fastr.resources.plugins.ioplugins.null (module)
fastr.resources.plugins.ioplugins.reference (module)
fastr.resources.plugins.ioplugins.s3filesystem (module)
fastr.resources.plugins.ioplugins.test.test_virtualfilesystem (module)
fastr.resources.plugins.ioplugins.virtualfilesystem (module)
fastr.resources.plugins.ioplugins.virtualfilesystemregularexpression (module)
fastr.resources.plugins.ioplugins.virtualfilesystemvaluelist (module)
fastr.resources.plugins.ioplugins.xnatstorage (module)
fastr.resources.plugins.reportingplugins.elasticsearchreporter (module)
fastr.resources.plugins.reportingplugins.pimreporter (module)
fastr.resources.plugins.reportingplugins.simplereport (module)
fastr.resources.plugins.targetplugins.dockertarget (module)
fastr.resources.plugins.targetplugins.localbinarytarget (module)
fastr.resources.plugins.targetplugins.macrotarget (module)
fastr.resources.plugins.targetplugins.singularitytarget (module)
fastr.resources.tools (module)
fastr.test (module)
fastr.utils (module)
fastr.utils.cmd (module)
fastr.utils.cmd.cat (module)
fastr.utils.cmd.dump (module)
fastr.utils.cmd.execute (module)
fastr.utils.cmd.extract_argparse (module)
fastr.utils.cmd.provenance (module)
fastr.utils.cmd.pylint (module)
fastr.utils.cmd.run (module)
fastr.utils.cmd.sink (module)
fastr.utils.cmd.source (module)
fastr.utils.cmd.test (module)
fastr.utils.cmd.trace (module)
fastr.utils.cmd.upgrade (module)
fastr.utils.cmd.verify (module)
fastr.utils.cmd.webapp (module)
fastr.utils.compare (module)
fastr.utils.dicteq (module)
fastr.utils.gettools (module)
fastr.utils.multiprocesswrapper (module)
fastr.utils.verify (module)
fastr.version (module)
fastr.web (module)
fastr.web.api (module)
fastr.web.run (module)
fastr.web.views (module)
fastr_cat() (in module fastr.utils.cmd.cat)
fastr_isinstance() (in module fastr.datatypes)
FastrAttributeError
FastrCannotChangeAttributeError
FastrCardinalityError
FastrCollectorError
FastrDataTypeFileNotReadable
FastrDataTypeMismatchError
FastrDataTypeNotAvailableError
FastrDataTypeNotInstantiableError
FastrDataTypeValueError
FastrDRMAANotFoundError
FastrDRMAANotFunctionalError
FastrError
FastrErrorInSubprocess
FastrExecutableNotFoundError
FastrExecutionError
FastrFileNotFound
FastrImportError
FastrIndexError
FastrIndexNonexistent
FastrInterface (class in fastr.plugins)
(class in fastr.resources.plugins.interfaceplugins.fastrinterface)
FastrIOError
FastrKeyError
FastrLockNotAcquired
FastrLogEventHandler (class in fastr.helpers.events)
FastrLookupError
FastrMountUnknownError
FastrNamespaceType (class in fastr.utils.cmd.upgrade)
FastrNetworkMismatchError
FastrNetworkUnknownError
FastrNodeAreadyPreparedError
FastrNodeNotPreparedError
FastrNodeNotValidError
FastrNotExecutableError
FastrNotImplementedError
FastrNoValidTargetError
FastrObjectUnknownError
FastrOptionalModuleNotAvailableError
FastrOSError
FastrOutputValidationError
FastrParentMismatchError
FastrPluginCapabilityNotImplemented
FastrPluginNotAvailable
FastrPluginNotLoaded
FastrRefResolver (class in fastr.helpers.jsonschemaparser)
FastrResultFileNotFound
FastrScriptNotFoundError
FastrSerializationError
FastrSerializationIgnoreDefaultError
FastrSerializationInvalidDataError
FastrSerializationMethodError
FastrSinkDataUnavailableError
FastrSizeInvalidError
FastrSizeMismatchError
FastrSizeUnknownError
FastrSourceDataUnavailableError
FastrStateError
FastrSubprocessNotFinished
FastrToolNotAvailableError
FastrToolTargetNotFound
FastrToolUnknownError
FastrToolVersionError
FastrTypeError
FastrUnknownURLSchemeError
FastrValueError
FastrVersionInvalidError
FastrVersionMismatchError
fetch_url() (fastr.core.ioplugin.IOPlugin method)
(fastr.core.vfs.VirtualFileSystem method)
(fastr.plugins.FileSystem method)
(fastr.plugins.HTTPPlugin method)
(fastr.plugins.S3Filesystem method)
(fastr.plugins.XNATStorage method)
(fastr.resources.plugins.ioplugins.filesystem.FileSystem method)
(fastr.resources.plugins.ioplugins.httpplugin.HTTPPlugin method)
(fastr.resources.plugins.ioplugins.s3filesystem.S3Filesystem method)
(fastr.resources.plugins.ioplugins.xnatstorage.XNATStorage method)
fetch_value() (fastr.core.ioplugin.IOPlugin method)
(fastr.core.vfs.VirtualFileSystem method)
(fastr.plugins.FileSystem method)
(fastr.plugins.S3Filesystem method)
(fastr.resources.plugins.ioplugins.filesystem.FileSystem method)
(fastr.resources.plugins.ioplugins.s3filesystem.S3Filesystem method)
filename (fastr.datatypes.BaseDataType attribute)
(fastr.plugins.BlockingExecution attribute)
(fastr.plugins.CommaSeperatedValueFile attribute)
(fastr.plugins.CrossValidation attribute)
(fastr.plugins.DRMAAExecution attribute)
(fastr.plugins.DockerTarget attribute)
(fastr.plugins.ElasticsearchReporter attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FileSystem attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.plugins.HTTPPlugin attribute)
(fastr.plugins.LinearExecution attribute)
(fastr.plugins.LocalBinaryTarget attribute)
(fastr.plugins.MacroTarget attribute)
(fastr.plugins.NipypeInterface attribute)
(fastr.plugins.Null attribute)
(fastr.plugins.PimReporter attribute)
(fastr.plugins.ProcessPoolExecution attribute)
(fastr.plugins.RQExecution attribute)
(fastr.plugins.Reference attribute)
(fastr.plugins.S3Filesystem attribute)
(fastr.plugins.SimpleReport attribute)
(fastr.plugins.SingularityTarget attribute)
(fastr.plugins.SlurmExecution attribute)
(fastr.plugins.StrongrExecution attribute)
(fastr.plugins.VirtualFileSystem attribute)
(fastr.plugins.VirtualFileSystemRegularExpression attribute)
(fastr.plugins.VirtualFileSystemValueList attribute)
(fastr.plugins.XNATStorage attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.PathDescription attribute)
FilePrefix (class in fastr.resources.datatypes.FilePrefix)
FileSyncHelper (class in fastr.helpers.filesynchelper)
filesynchelper_enabled() (in module fastr.helpers.filesynchelper)
filesynchelper_url (fastr.helpers.configmanager.Config attribute)
FileSystem (class in fastr.plugins)
(class in fastr.resources.plugins.ioplugins.filesystem)
fill_output_argument() (fastr.execution.job.Job class method)
filter_plugin() (fastr.plugins.managers.pluginmanager.PluginsView method)
find_argparser() (in module fastr.utils.cmd.extract_argparse)
find_commands() (in module fastr.utils.cmd)
find_source_index() (fastr.execution.noderun.NodeRun method)
(fastr.planning.inputgroup.InputGroup method)
(fastr.planning.node.Node method)
find_tool() (in module fastr.utils.cmd.upgrade)
finished (fastr.execution.job.JobState attribute)
Float (class in fastr.resources.datatypes.Float)
flow_plugin_type (fastr.plugins.FlowInterface attribute)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowInterface attribute)
flow_plugins (fastr.plugins.FlowInterface attribute)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowInterface attribute)
FlowInterface (class in fastr.plugins)
(class in fastr.resources.plugins.interfaceplugins.flowinterface)
FlowNode (class in fastr.planning.node)
FlowNodeRun (class in fastr.execution.flownoderun)
FlowPlugin (class in fastr.resources.plugins.interfaceplugins.flowinterface)
FlowPluginManager (class in fastr.resources.plugins.interfaceplugins.flowinterface)
format() (fastr.web.api.ObjectUrl method)
(fastr.web.api.SubUrl method)
format_argument_value() (fastr.resources.plugins.interfaceplugins.fastrinterface.OutputParameterDescription method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.ParameterDescription method)
format_prefix() (fastr.resources.plugins.interfaceplugins.fastrinterface.ParameterDescription method)
ForwardsDimensions (class in fastr.core.dimension)
from_schema() (fastr.helpers.jsonschemaparser.FastrRefResolver class method)
full_split() (in module fastr.data.url)
fullid (fastr.core.samples.SampleCollection attribute)
(fastr.core.tool.Tool attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.DataTypeManager attribute)
(fastr.execution.inputoutputrun.InputRun attribute)
(fastr.execution.inputoutputrun.OutputRun attribute)
(fastr.execution.inputoutputrun.SubInputRun attribute)
(fastr.execution.inputoutputrun.SubOutputRun attribute)
(fastr.execution.job.Job attribute)
(fastr.execution.linkrun.LinkRun attribute)
(fastr.execution.networkrun.NetworkRun attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.planning.inputgroup.InputGroup attribute)
(fastr.planning.inputgroupcombiner.BaseInputGroupCombiner attribute)
(fastr.planning.inputoutput.BaseInputOutput attribute)
(fastr.planning.inputoutput.Input attribute)
(fastr.planning.inputoutput.Output attribute)
(fastr.planning.inputoutput.SubInput attribute)
(fastr.planning.inputoutput.SubOutput attribute)
(fastr.planning.link.Link attribute)
(fastr.planning.network.Network attribute)
(fastr.planning.node.Node attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.CollectorPlugin attribute)
function_wrapper() (in module fastr.utils.multiprocesswrapper)
G
GE_NATIVE_SPEC (fastr.plugins.DRMAAExecution attribute)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution attribute)
generate_jobs() (fastr.execution.networkrun.NetworkRun method)
get() (fastr.web.api.NetworkApi method)
(fastr.web.api.NetworkListApi method)
(fastr.web.api.RunApi method)
(fastr.web.api.RunListApi method)
(fastr.web.api.StatusApi method)
(fastr.web.api.ToolApi method)
(fastr.web.api.ToolListApi method)
get_arguments() (fastr.plugins.FastrInterface method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface method)
get_base_version() (in module fastr.version)
get_command() (fastr.plugins.FastrInterface method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface method)
get_command_module() (in module fastr.utils.cmd)
get_commandline_argument() (fastr.resources.plugins.interfaceplugins.fastrinterface.OutputParameterDescription method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.ParameterDescription method)
get_cpu_usage() (in module fastr.helpers.sysinfo)
get_deferred() (fastr.execution.job.Job method)
get_drmaa_info() (in module fastr.helpers.sysinfo)
get_field() (fastr.helpers.configmanager.Config method)
get_hg_info() (in module fastr.version)
get_hostinfo() (in module fastr.helpers.sysinfo)
get_job() (fastr.plugins.executionplugin.ExecutionPlugin method)
get_memory_usage() (in module fastr.helpers.sysinfo)
get_message() (in module fastr.exceptions)
get_mounts() (in module fastr.helpers.sysinfo)
get_object_version() (fastr.plugins.managers.networkmanager.NetworkManager method)
(fastr.plugins.managers.objectmanager.ObjectManager method)
(fastr.plugins.managers.toolmanager.ToolManager method)
get_os() (in module fastr.helpers.sysinfo)
get_output_datatype() (fastr.execution.job.Job method)
(fastr.execution.job.SourceJob method)
get_output_info() (fastr.execution.macronoderun.MacroNodeRun method)
(fastr.planning.node.MacroNode method)
get_parent_provenance() (fastr.core.provenance.Provenance static method)
get_parser() (in module fastr.utils.cmd.cat)
(in module fastr.utils.cmd.dump)
(in module fastr.utils.cmd.execute)
(in module fastr.utils.cmd.extract_argparse)
(in module fastr.utils.cmd.provenance)
(in module fastr.utils.cmd.pylint)
(in module fastr.utils.cmd.run)
(in module fastr.utils.cmd.sink)
(in module fastr.utils.cmd.source)
(in module fastr.utils.cmd.test)
(in module fastr.utils.cmd.trace)
(in module fastr.utils.cmd.upgrade)
(in module fastr.utils.cmd.verify)
(in module fastr.utils.cmd.webapp)
get_path_from_url() (in module fastr.data.url)
get_processes() (in module fastr.helpers.sysinfo)
get_prov_document() (in module fastr.utils.cmd.provenance)
get_python() (in module fastr.helpers.sysinfo)
get_result() (fastr.execution.job.InlineJob method)
(fastr.execution.job.Job method)
(fastr.execution.job.SinkJob method)
get_saved_version() (in module fastr.version)
get_sourced_nodes() (fastr.execution.inputoutputrun.InputRun method)
(fastr.execution.inputoutputrun.SubInputRun method)
(fastr.execution.noderun.NodeRun method)
(fastr.planning.inputoutput.Input method)
(fastr.planning.inputoutput.SubInput method)
(fastr.planning.node.Node method)
get_sourced_outputs() (fastr.execution.inputoutputrun.InputRun method)
(fastr.execution.inputoutputrun.SubInputRun method)
(fastr.planning.inputoutput.Input method)
(fastr.planning.inputoutput.SubInput method)
get_specials() (fastr.plugins.FastrInterface method)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface method)
get_status() (fastr.plugins.executionplugin.ExecutionPlugin method)
get_sysinfo() (in module fastr.helpers.sysinfo)
get_type() (fastr.datatypes.DataTypeManager method)
(fastr.plugins.NipypeInterface method)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.NipypeInterface method)
get_url_scheme() (in module fastr.data.url)
get_users() (in module fastr.helpers.sysinfo)
get_value() (fastr.execution.job.Job class method)
getblueprinter() (in module fastr.helpers.jsonschemaparser)
global_id (fastr.execution.networkrun.NetworkRun attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.planning.network.Network attribute)
(fastr.planning.node.Node attribute)
guess_type() (fastr.datatypes.DataTypeManager method)
H
has_file_promise() (fastr.helpers.filesynchelper.FileSyncHelper method)
has_type() (fastr.datatypes.DataTypeManager method)
HasDimensions (class in fastr.core.dimension)
hash (fastr.core.tool.Tool attribute)
hash_inputs() (fastr.execution.job.Job method)
(fastr.execution.job.SinkJob method)
(fastr.execution.job.SourceJob method)
hash_results() (fastr.execution.job.Job method)
hashsum() (in module fastr.helpers.checksum)
HasSamples (class in fastr.core.samples)
help (fastr.core.tool.Tool attribute)
HiddenFieldMap (class in fastr.resources.plugins.interfaceplugins.fastrinterface)
(class in fastr.resources.plugins.interfaceplugins.nipypeinterface)
hold (fastr.execution.job.JobState attribute)
(fastr.plugins.executionplugin.JobAction attribute)
hold_job() (fastr.plugins.executionplugin.ExecutionPlugin method)
HTTPPlugin (class in fastr.plugins)
(class in fastr.resources.plugins.ioplugins.httpplugin)
I
id (fastr.api.Input attribute)
(fastr.api.Link attribute)
(fastr.api.Network attribute)
(fastr.api.Node attribute)
(fastr.api.Output attribute)
(fastr.core.samples.SampleItemBase attribute)
(fastr.core.tool.Tool attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.execution.job.Job attribute)
(fastr.execution.job.SinkJob attribute)
(fastr.execution.networkrun.NetworkRun attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.planning.inputoutput.BaseInputOutput attribute)
(fastr.planning.network.Network attribute)
(fastr.planning.node.Node attribute)
idle (fastr.execution.job.JobState attribute)
ids() (fastr.core.samples.HasSamples method)
in_progress (fastr.execution.job.JobState attribute)
index (fastr.core.samples.SampleItemBase attribute)
index() (fastr.execution.inputoutputrun.InputRun method)
(fastr.planning.inputoutput.Input method)
(in module fastr.web.views)
indexes() (fastr.core.samples.HasSamples method)
indexrep (fastr.execution.inputoutputrun.SubOutputRun attribute)
(fastr.planning.inputoutput.SubOutput attribute)
INFO_DUMP (fastr.execution.job.Job attribute)
init_provenance() (fastr.core.provenance.Provenance method)
InlineJob (class in fastr.execution.job)
Input (class in fastr.api)
(class in fastr.planning.inputoutput)
input (fastr.api.Node attribute)
(fastr.execution.sinknoderun.SinkNodeRun attribute)
(fastr.planning.node.SinkNode attribute)
input_group (fastr.api.Input attribute)
(fastr.execution.inputoutputrun.InputRun attribute)
(fastr.execution.inputoutputrun.SubInputRun attribute)
(fastr.planning.inputoutput.Input attribute)
(fastr.planning.inputoutput.MacroInput attribute)
(fastr.planning.inputoutput.SubInput attribute)
input_groups (fastr.execution.noderun.NodeRun attribute)
(fastr.planning.inputgroupcombiner.BaseInputGroupCombiner attribute)
(fastr.planning.node.Node attribute)
input_map (fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface attribute)
InputDict (class in fastr.planning.node)
InputGroup (class in fastr.planning.inputgroup)
InputParameterDescription (class in fastr.resources.plugins.interfaceplugins.fastrinterface)
InputRun (class in fastr.execution.inputoutputrun)
inputs (fastr.api.Node attribute)
(fastr.core.interface.Interface attribute)
(fastr.core.tool.Tool attribute)
(fastr.planning.node.Node attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.plugins.NipypeInterface attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface attribute)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowInterface attribute)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.NipypeInterface attribute)
InputSpec (class in fastr.core.interface)
InputSpecBase (in module fastr.core.interface)
insert() (fastr.execution.inputoutputrun.InputRun method)
(fastr.planning.inputoutput.Input method)
Int (class in fastr.resources.datatypes.Int)
IntCardinalitySpec (class in fastr.core.cardinality)
Interface (class in fastr.core.interface)
InterfacePluginManager (class in fastr.plugins.managers.interfacemanager)
InterfaceResult (class in fastr.core.interface)
IOPlugin (class in fastr.core.ioplugin)
IOPluginManager (class in fastr.plugins.managers.iopluginmanager)
is_mapping (fastr.core.samples.SampleValue attribute)
is_sequence (fastr.core.samples.SampleValue attribute)
is_valid() (fastr.planning.network.Network method)
isdatatype() (fastr.datatypes.DataTypeManager static method)
isinstance() (fastr.datatypes.BaseDataType class method)
(fastr.datatypes.TypeGroup class method)
isloaded() (fastr.execution.environmentmodules.EnvironmentModules method)
isslice (fastr.core.samples.SampleIndex attribute)
isurl() (fastr.core.ioplugin.IOPlugin static method)
(in module fastr.data.url)
items() (fastr.core.samples.HasSamples method)
items_prevalidate() (in module fastr.helpers.jsonschemaparser)
iter_input_groups() (fastr.planning.inputgroupcombiner.BaseInputGroupCombiner method)
(fastr.planning.inputgroupcombiner.DefaultInputGroupCombiner method)
(fastr.planning.inputgroupcombiner.MergingInputGroupCombiner method)
iterconvergingindices() (fastr.execution.inputoutputrun.OutputRun method)
iterelements() (fastr.core.samples.SampleValue method)
iterinputvalues (fastr.planning.inputgroup.InputGroup attribute)
iteritems() (fastr.core.samples.HasSamples method)
(fastr.execution.inputoutputrun.SubInputRun method)
(fastr.planning.inputoutput.SubInput method)
itersubinputs() (fastr.execution.inputoutputrun.BaseInputRun method)
(fastr.execution.inputoutputrun.InputRun method)
(fastr.execution.inputoutputrun.SubInputRun method)
(fastr.planning.inputoutput.BaseInput method)
(fastr.planning.inputoutput.Input method)
(fastr.planning.inputoutput.SubInput method)
ITKImageFile (class in fastr.resources.datatypes.ITKImageFile)
J
Job (class in fastr.execution.job)
job (fastr.datatypes.Deferred attribute)
job_cleanup_level (fastr.helpers.configmanager.Config attribute)
job_finished() (fastr.execution.networkrun.NetworkRun method)
(fastr.helpers.filesynchelper.FileSyncHelper method)
(fastr.plugins.executionplugin.ExecutionPlugin method)
job_finished_callback() (fastr.plugins.ProcessPoolExecution method)
(fastr.resources.plugins.executionplugins.processpoolexecution.ProcessPoolExecution method)
job_regression_check() (fastr.plugins.DRMAAExecution method)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution method)
job_status_check() (fastr.plugins.SlurmExecution method)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution method)
job_update_loop() (fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 method)
job_updated (fastr.helpers.events.EventType attribute)
job_updated() (fastr.plugins.ElasticsearchReporter method)
(fastr.plugins.PimReporter method)
(fastr.plugins.reportingplugin.ReportingPlugin method)
(fastr.resources.plugins.reportingplugins.elasticsearchreporter.ElasticsearchReporter method)
(fastr.resources.plugins.reportingplugins.pimreporter.PimReporter method)
JobAction (class in fastr.plugins.executionplugin)
JobCleanupLevel (class in fastr.execution.job)
jobs (fastr.core.samples.SampleItemBase attribute)
JobState (class in fastr.execution.job)
join() (in module fastr.data.url)
json (in module fastr.plugins)
JsonCollector (class in fastr.resources.plugins.collectorplugins.jsoncollector)
JsonFile (class in fastr.resources.datatypes.JsonFile)
K
kfold() (in module fastr.resources.plugins.flowplugins.crossvalidation)
L
LazyModule (class in fastr.helpers.lazy_module)
LinearExecution (class in fastr.plugins)
(class in fastr.resources.plugins.executionplugins.linearexecution)
linearized (fastr.execution.inputoutputrun.SourceOutputRun attribute)
(fastr.planning.inputoutput.SourceOutput attribute)
Link (class in fastr.api)
(class in fastr.planning.link)
link_or_copy() (in module fastr.helpers.iohelpers)
LinkRun (class in fastr.execution.linkrun)
listeners (fastr.execution.inputoutputrun.OutputRun attribute)
(fastr.execution.inputoutputrun.SubOutputRun attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.planning.inputoutput.Output attribute)
(fastr.planning.inputoutput.SubOutput attribute)
(fastr.planning.node.Node attribute)
lmod (fastr.execution.environmentmodules.ModuleSystem attribute)
load() (fastr.api.Network class method)
(fastr.execution.environmentmodules.EnvironmentModules method)
(fastr.helpers.filesynchelper.FileSyncHelper method)
(in module fastr.helpers.xmltodict)
load_gpickle() (in module fastr.helpers.iohelpers)
load_json() (in module fastr.helpers.iohelpers)
loaded_modules (fastr.execution.environmentmodules.EnvironmentModules attribute)
loads() (in module fastr.helpers.xmltodict)
LocalBinaryTarget (class in fastr.plugins)
(class in fastr.resources.plugins.targetplugins.localbinarytarget)
lock_dir (fastr.helpers.lockfile.DirectoryLock attribute)
lock_dir_name (fastr.helpers.lockfile.DirectoryLock attribute)
log_record_emitted (fastr.helpers.events.EventType attribute)
log_record_emitted() (fastr.plugins.PimReporter method)
(fastr.plugins.reportingplugin.ReportingPlugin method)
(fastr.resources.plugins.reportingplugins.pimreporter.PimReporter method)
logdir (fastr.helpers.configmanager.Config attribute)
logfile (fastr.execution.job.Job attribute)
logging_config (fastr.helpers.configmanager.Config attribute)
loglevel (fastr.helpers.configmanager.Config attribute)
logtype (fastr.helpers.configmanager.Config attribute)
logurl (fastr.execution.job.Job attribute)
long_id (fastr.execution.networkrun.NetworkRun attribute)
lookup() (fastr.datatypes.Deferred class method)
M
MacroInput (class in fastr.planning.inputoutput)
MacroNode (class in fastr.planning.node)
MacroNodeRun (class in fastr.execution.macronoderun)
MacroOutput (class in fastr.planning.inputoutput)
MacroOutputRun (class in fastr.execution.inputoutputrun)
MacroTarget (class in fastr.plugins)
(class in fastr.resources.plugins.targetplugins.macrotarget)
main() (in module fastr.execution.executionscript)
(in module fastr.helpers.clear_pycs)
(in module fastr.utils.cmd)
(in module fastr.utils.cmd.cat)
(in module fastr.utils.cmd.dump)
(in module fastr.utils.cmd.execute)
(in module fastr.utils.cmd.extract_argparse)
(in module fastr.utils.cmd.provenance)
(in module fastr.utils.cmd.pylint)
(in module fastr.utils.cmd.run)
(in module fastr.utils.cmd.sink)
(in module fastr.utils.cmd.source)
(in module fastr.utils.cmd.test)
(in module fastr.utils.cmd.trace)
(in module fastr.utils.cmd.upgrade)
(in module fastr.utils.cmd.verify)
(in module fastr.utils.cmd.webapp)
(in module fastr.utils.gettools)
(in module fastr.web.run)
major (fastr.core.version.Version attribute)
make_file_promise() (fastr.helpers.filesynchelper.FileSyncHelper method)
mapping_part() (fastr.core.samples.SampleValue method)
match_types() (fastr.datatypes.DataTypeManager method)
match_types_any() (fastr.datatypes.DataTypeManager method)
MaxCardinalitySpec (class in fastr.core.cardinality)
md5_checksum() (in module fastr.helpers.checksum)
mediatypes() (fastr.web.api.NetworkApi method)
(fastr.web.api.NetworkListApi method)
(fastr.web.api.RunApi method)
(fastr.web.api.RunListApi method)
(fastr.web.api.StatusApi method)
(fastr.web.api.ToolApi method)
(fastr.web.api.ToolListApi method)
members (fastr.datatypes.TypeGroup attribute)
memory (fastr.api.ResourceLimit attribute)
(fastr.core.resourcelimit.ResourceLimit attribute)
merge() (fastr.planning.inputgroupcombiner.BaseInputGroupCombiner method)
(fastr.planning.inputgroupcombiner.DefaultInputGroupCombiner method)
(fastr.planning.inputgroupcombiner.MergingInputGroupCombiner method)
merge_default() (fastr.helpers.configmanager.EmptyDefault method)
merge_dimensions (fastr.execution.noderun.NodeRun attribute)
(fastr.planning.node.Node attribute)
merge_failed_annotations() (fastr.planning.inputgroupcombiner.BaseInputGroupCombiner method)
merge_payloads() (fastr.planning.inputgroupcombiner.BaseInputGroupCombiner method)
merge_sample_data() (fastr.planning.inputgroupcombiner.BaseInputGroupCombiner method)
merge_sample_id() (fastr.planning.inputgroupcombiner.BaseInputGroupCombiner method)
merge_sample_index() (fastr.planning.inputgroupcombiner.BaseInputGroupCombiner method)
merge_sample_jobs() (fastr.planning.inputgroupcombiner.BaseInputGroupCombiner method)
MergingInputGroupCombiner (class in fastr.planning.inputgroupcombiner)
MetaImageFile (class in fastr.resources.datatypes.MetaImageFile)
methods (fastr.web.api.NetworkApi attribute)
(fastr.web.api.NetworkListApi attribute)
(fastr.web.api.RunApi attribute)
(fastr.web.api.RunListApi attribute)
(fastr.web.api.StatusApi attribute)
(fastr.web.api.ToolApi attribute)
(fastr.web.api.ToolListApi attribute)
MinCardinalitySpec (class in fastr.core.cardinality)
minor (fastr.core.version.Version attribute)
mkdirs() (fastr.resources.plugins.interfaceplugins.fastrinterface.OutputParameterDescription method)
module (fastr.plugins.BlockingExecution attribute)
(fastr.plugins.CommaSeperatedValueFile attribute)
(fastr.plugins.CrossValidation attribute)
(fastr.plugins.DRMAAExecution attribute)
(fastr.plugins.DockerTarget attribute)
(fastr.plugins.ElasticsearchReporter attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FileSystem attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.plugins.HTTPPlugin attribute)
(fastr.plugins.LinearExecution attribute)
(fastr.plugins.LocalBinaryTarget attribute)
(fastr.plugins.MacroTarget attribute)
(fastr.plugins.NipypeInterface attribute)
(fastr.plugins.Null attribute)
(fastr.plugins.PimReporter attribute)
(fastr.plugins.ProcessPoolExecution attribute)
(fastr.plugins.RQExecution attribute)
(fastr.plugins.Reference attribute)
(fastr.plugins.S3Filesystem attribute)
(fastr.plugins.SimpleReport attribute)
(fastr.plugins.SingularityTarget attribute)
(fastr.plugins.SlurmExecution attribute)
(fastr.plugins.StrongrExecution attribute)
(fastr.plugins.VirtualFileSystem attribute)
(fastr.plugins.VirtualFileSystemRegularExpression attribute)
(fastr.plugins.VirtualFileSystemValueList attribute)
(fastr.plugins.XNATStorage attribute)
ModuleSystem (class in fastr.execution.environmentmodules)
monitor_docker() (fastr.plugins.DockerTarget method)
(fastr.resources.plugins.targetplugins.dockertarget.DockerTarget method)
monitor_process() (fastr.core.target.SubprocessBasedTarget method)
mounts (fastr.helpers.configmanager.Config attribute)
N
name (fastr.core.dimension.Dimension attribute)
(fastr.core.tool.Tool attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.planning.node.Node attribute)
namedtuple_to_dict() (in module fastr.helpers.sysinfo)
namespace (fastr.core.tool.Tool attribute)
(fastr.planning.network.Network attribute)
NATIVE_SPEC (fastr.plugins.DRMAAExecution attribute)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution attribute)
ndims (fastr.core.dimension.HasDimensions attribute)
(fastr.core.samples.SampleCollection attribute)
(fastr.execution.inputoutputrun.SourceOutputRun attribute)
Network (class in fastr.api)
(class in fastr.planning.network)
network (fastr.execution.networkrun.NetworkRun attribute)
(fastr.planning.node.MacroNode attribute)
network() (in module fastr.web.views)
NETWORK_DUMP_FILE_NAME (fastr.execution.networkrun.NetworkRun attribute)
(fastr.planning.network.Network attribute)
network_lock_thread() (in module fastr.web.api)
network_run (fastr.execution.macronoderun.MacroNodeRun attribute)
network_runner() (in module fastr.web.api)
NetworkAnalyzer (class in fastr.execution.networkanalyzer)
NetworkApi (class in fastr.web.api)
NetworkChunker (class in fastr.execution.networkchunker)
NetworkListApi (class in fastr.web.api)
NetworkManager (class in fastr.plugins.managers.networkmanager)
NetworkRun (class in fastr.execution.networkrun)
networks (fastr attribute)
networks() (in module fastr.web.views)
networks_path (fastr.helpers.configmanager.Config attribute)
NiftiImageFile (class in fastr.resources.datatypes.NiftiImageFile)
NiftiImageFileCompressed (class in fastr.resources.datatypes.NiftiImageFileCompressed)
NiftiImageFileUncompressed (class in fastr.resources.datatypes.NiftiImageFileUncompressed)
NipypeInterface (class in fastr.plugins)
(class in fastr.resources.plugins.interfaceplugins.nipypeinterface)
no_cleanup (fastr.execution.job.JobCleanupLevel attribute)
Node (class in fastr.api)
(class in fastr.planning.node)
node (fastr.core.cardinality.AsCardinalitySpec attribute)
(fastr.core.cardinality.ValueCardinalitySpec attribute)
(fastr.execution.inputoutputrun.SubInputRun attribute)
(fastr.execution.inputoutputrun.SubOutputRun attribute)
(fastr.planning.inputoutput.BaseInputOutput attribute)
(fastr.planning.inputoutput.SubInput attribute)
(fastr.planning.inputoutput.SubOutput attribute)
node_class (fastr.core.tool.Tool attribute)
NODE_CLASSES (fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 attribute)
NODE_RUN_MAP (fastr.execution.basenoderun.BaseNodeRun attribute)
NODE_RUN_TYPES (fastr.execution.basenoderun.BaseNodeRun attribute)
NODE_TYPES (fastr.planning.node.BaseNode attribute)
nodegroup (fastr.planning.node.Node attribute)
(fastr.planning.node.SourceNode attribute)
nodegroups (fastr.execution.networkrun.NetworkRun attribute)
(fastr.planning.network.Network attribute)
NodeRun (class in fastr.execution.noderun)
non_failed (fastr.execution.job.JobCleanupLevel attribute)
nonexistent (fastr.execution.job.JobState attribute)
normurl() (in module fastr.data.url)
not_draft4() (in module fastr.helpers.jsonschemaparser)
NrrdImageFile (class in fastr.resources.datatypes.NrrdImageFile)
ns_id (fastr.core.tool.Tool attribute)
(fastr.planning.network.Network attribute)
Null (class in fastr.plugins)
(class in fastr.resources.plugins.ioplugins.null)
Number (class in fastr.resources.datatypes.Number)
O
object_class (fastr.plugins.managers.networkmanager.NetworkManager attribute)
(fastr.plugins.managers.objectmanager.ObjectManager attribute)
(fastr.plugins.managers.toolmanager.ToolManager attribute)
ObjectManager (class in fastr.plugins.managers.objectmanager)
ObjectUrl (class in fastr.web.api)
objectversions() (fastr.plugins.managers.objectmanager.ObjectManager method)
one_of_draft4() (in module fastr.helpers.jsonschemaparser)
open_url() (in module fastr.utils.cmd.webapp)
options (fastr.datatypes.EnumType attribute)
Output (class in fastr.api)
(class in fastr.planning.inputoutput)
output (fastr.api.Node attribute)
(fastr.execution.sourcenoderun.SourceNodeRun attribute)
(fastr.planning.node.SourceNode attribute)
output_map (fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface attribute)
OutputDict (class in fastr.planning.node)
OutputParameterDescription (class in fastr.resources.plugins.interfaceplugins.fastrinterface)
OutputRun (class in fastr.execution.inputoutputrun)
outputs (fastr.api.Node attribute)
(fastr.core.interface.Interface attribute)
(fastr.core.tool.Tool attribute)
(fastr.planning.node.Node attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.plugins.NipypeInterface attribute)
(fastr.resources.plugins.interfaceplugins.fastrinterface.FastrInterface attribute)
(fastr.resources.plugins.interfaceplugins.flowinterface.FlowInterface attribute)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.NipypeInterface attribute)
outputsize (fastr.execution.flownoderun.FlowNodeRun attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.execution.sourcenoderun.SourceNodeRun attribute)
(fastr.planning.node.FlowNode attribute)
(fastr.planning.node.Node attribute)
OutputSpec (class in fastr.core.interface)
OutputSpecBase (in module fastr.core.interface)
P
ParameterDescription (class in fastr.resources.plugins.interfaceplugins.fastrinterface)
parent (fastr.core.samples.SampleCollection attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.execution.linkrun.LinkRun attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.planning.inputgroup.InputGroup attribute)
(fastr.planning.link.Link attribute)
(fastr.planning.node.Node attribute)
parse() (fastr.helpers.schematotable.SchemaPrinter method)
parse_uri() (fastr.plugins.XNATStorage method)
(fastr.resources.plugins.ioplugins.xnatstorage.XNATStorage method)
parsed_value (fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.Deferred attribute)
(fastr.datatypes.URLType attribute)
path (fastr.core.tool.Tool attribute)
(in module fastr.plugins)
path_to_url() (fastr.core.ioplugin.IOPlugin method)
(fastr.core.vfs.VirtualFileSystem method)
(fastr.plugins.FileSystem method)
(fastr.resources.plugins.ioplugins.filesystem.FileSystem method)
PathCollector (class in fastr.resources.plugins.collectorplugins.pathcollector)
PathDescription (class in fastr.resources.plugins.interfaceplugins.fastrinterface)
paths (fastr.plugins.LocalBinaryTarget attribute)
(fastr.resources.plugins.targetplugins.localbinarytarget.LocalBinaryTarget attribute)
pattern_properties_prevalid() (in module fastr.helpers.jsonschemaparser)
pid_file (fastr.helpers.lockfile.DirectoryLock attribute)
pid_file_name (fastr.helpers.lockfile.DirectoryLock attribute)
pim_batch_size (fastr.helpers.configmanager.Config attribute)
pim_debug (fastr.helpers.configmanager.Config attribute)
pim_finish_run() (fastr.resources.plugins.reportingplugins.pimreporter.BasePimAPI method)
(fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 method)
pim_host (fastr.helpers.configmanager.Config attribute)
pim_log_line() (fastr.resources.plugins.reportingplugins.pimreporter.BasePimAPI method)
(fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 method)
pim_register_run() (fastr.resources.plugins.reportingplugins.pimreporter.BasePimAPI method)
(fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 method)
pim_serialize_link() (fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 method)
pim_serialize_macro() (fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 method)
pim_serialize_network() (fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 method)
pim_serialize_node() (fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 method)
PIM_STATUS_MAPPING (fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 attribute)
pim_update_interval (fastr.helpers.configmanager.Config attribute)
pim_update_status() (fastr.resources.plugins.reportingplugins.pimreporter.BasePimAPI method)
(fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 method)
PimAPIv2 (class in fastr.resources.plugins.reportingplugins.pimreporter)
PimReporter (class in fastr.plugins)
(class in fastr.resources.plugins.reportingplugins.pimreporter)
plugin_class (fastr.datatypes.DataTypeManager attribute)
(fastr.plugins.managers.pluginmanager.PluginManager attribute)
(fastr.plugins.managers.pluginmanager.PluginSubManager attribute)
PluginManager (class in fastr.plugins.managers.pluginmanager)
plugins_path (fastr.helpers.configmanager.Config attribute)
PluginSubManager (class in fastr.plugins.managers.pluginmanager)
PluginsView (class in fastr.plugins.managers.pluginmanager)
poll_datatype() (fastr.datatypes.DataTypeManager method)
populate() (fastr.datatypes.DataTypeManager method)
(fastr.plugins.managers.toolmanager.ToolManager method)
post() (fastr.web.api.RunListApi method)
predefined (fastr.core.cardinality.AsCardinalitySpec attribute)
(fastr.core.cardinality.CardinalitySpec attribute)
(fastr.core.cardinality.IntCardinalitySpec attribute)
preference (fastr.datatypes.TypeGroup attribute)
preferred_types (fastr.datatypes.DataTypeManager attribute)
(fastr.execution.inputoutputrun.OutputRun attribute)
(fastr.execution.inputoutputrun.SubOutputRun attribute)
(fastr.helpers.configmanager.Config attribute)
(fastr.planning.inputoutput.Output attribute)
(fastr.planning.inputoutput.SubOutput attribute)
prepend() (fastr.helpers.configmanager.EmptyDefault method)
primary (fastr.planning.inputgroup.InputGroup attribute)
print_help() (in module fastr.utils.cmd)
print_job_result() (in module fastr.utils.cmd.trace)
print_result() (fastr.core.ioplugin.IOPlugin static method)
print_sample_sink() (in module fastr.utils.cmd.trace)
print_samples() (in module fastr.utils.cmd.trace)
print_sinks() (in module fastr.utils.cmd.trace)
print_value (fastr.planning.node.ConstantNode attribute)
printlines() (fastr.helpers.schematotable.SchemaPrinter method)
process_callbacks() (fastr.plugins.executionplugin.ExecutionPlugin method)
process_pool_worker_number (fastr.helpers.configmanager.Config attribute)
processing_callback (fastr.execution.job.JobState attribute)
ProcessPoolExecution (class in fastr.plugins)
(class in fastr.resources.plugins.executionplugins.processpoolexecution)
ProcessUsageCollection (class in fastr.core.target)
properties_postvalidate() (in module fastr.helpers.jsonschemaparser)
properties_prevalidate() (in module fastr.helpers.jsonschemaparser)
protected_modules (fastr.helpers.configmanager.Config attribute)
prov() (in module fastr.web.views)
PROV_DUMP (fastr.execution.job.Job attribute)
Provenance (class in fastr.core.provenance)
provenance (fastr.datatypes.Deferred attribute)
provfile (fastr.execution.job.Job attribute)
ProvNFile (class in fastr.resources.datatypes.ProvNFile)
provurl (fastr.execution.job.Job attribute)
pull_source_data() (fastr.core.ioplugin.IOPlugin method)
(fastr.plugins.managers.iopluginmanager.IOPluginManager method)
push_sink_data() (fastr.core.ioplugin.IOPlugin method)
(fastr.plugins.Reference method)
(fastr.plugins.managers.iopluginmanager.IOPluginManager method)
(fastr.resources.plugins.ioplugins.reference.Reference method)
put_url() (fastr.core.ioplugin.IOPlugin method)
(fastr.core.vfs.VirtualFileSystem method)
(fastr.plugins.FileSystem method)
(fastr.plugins.Null method)
(fastr.plugins.S3Filesystem method)
(fastr.plugins.XNATStorage method)
(fastr.plugins.managers.iopluginmanager.IOPluginManager method)
(fastr.resources.plugins.ioplugins.filesystem.FileSystem method)
(fastr.resources.plugins.ioplugins.null.Null method)
(fastr.resources.plugins.ioplugins.s3filesystem.S3Filesystem method)
(fastr.resources.plugins.ioplugins.xnatstorage.XNATStorage method)
put_value() (fastr.core.ioplugin.IOPlugin method)
(fastr.core.vfs.VirtualFileSystem method)
(fastr.plugins.FileSystem method)
(fastr.plugins.Null method)
(fastr.plugins.S3Filesystem method)
(fastr.resources.plugins.ioplugins.filesystem.FileSystem method)
(fastr.resources.plugins.ioplugins.null.Null method)
(fastr.resources.plugins.ioplugins.s3filesystem.S3Filesystem method)
Python Enhancement Proposals
PEP 8
,
[1]
PEP 8#class-names
PEP 8#global-variable-names
PEP 8#method-names-and-instance-variables
PEP 8#package-and-module-names
PEP 8#prescriptive-naming-conventions
Q
queue (fastr.plugins.executionplugin.JobAction attribute)
queue_job() (fastr.plugins.executionplugin.ExecutionPlugin method)
queued (fastr.execution.job.JobState attribute)
R
random_unique_string() (fastr.resources.plugins.ioplugins.test.test_virtualfilesystem.TestVFS method)
RangeCardinalitySpec (class in fastr.core.cardinality)
raw_value (fastr.datatypes.BaseDataType attribute)
read_bytes (fastr.core.target.SystemUsageInfo attribute)
read_config() (fastr.helpers.configmanager.Config method)
read_config_files (fastr.helpers.configmanager.Config attribute)
read_config_string() (fastr.helpers.configmanager.Config method)
read_sink_data() (in module fastr.utils.cmd.trace)
readfastrschema() (fastr.helpers.jsonschemaparser.FastrRefResolver static method)
readfile() (fastr.helpers.jsonschemaparser.FastrRefResolver static method)
Reference (class in fastr.plugins)
(class in fastr.resources.plugins.ioplugins.reference)
references (fastr.core.tool.Tool attribute)
register_fields() (fastr.helpers.configmanager.Config method)
register_job() (fastr.plugins.executionplugin.ExecutionPlugin method)
register_listener() (in module fastr.helpers.events)
register_signals() (fastr.execution.networkrun.NetworkRun method)
register_url_scheme() (fastr.plugins.managers.iopluginmanager.IOPluginManager static method)
(in module fastr.data.url)
release() (fastr.helpers.lockfile.DirectoryLock method)
release_job() (fastr.plugins.executionplugin.ExecutionPlugin method)
reload() (fastr.execution.environmentmodules.EnvironmentModules method)
remove() (fastr.execution.inputoutputrun.InputRun method)
(fastr.planning.inputoutput.Input method)
(fastr.planning.inputoutput.SubInput method)
(fastr.planning.network.Network method)
remove_listener() (in module fastr.helpers.events)
reporting_plugins (fastr.helpers.configmanager.Config attribute)
ReportingPlugin (class in fastr.plugins.reportingplugin)
request_parser (fastr.web.api.RunListApi attribute)
required (fastr.planning.inputoutput.BaseInputOutput attribute)
requirements (fastr.core.tool.Tool attribute)
ResourceLimit (class in fastr.api)
(class in fastr.core.resourcelimit)
resources (fastr.execution.job.Job attribute)
(fastr.execution.noderun.NodeRun attribute)
resourcesdir (fastr.helpers.configmanager.Config attribute)
RESULT_DUMP (fastr.execution.job.Job attribute)
resulting_datatype (fastr.execution.inputoutputrun.OutputRun attribute)
(fastr.execution.inputoutputrun.SubOutputRun attribute)
(fastr.planning.inputoutput.Output attribute)
(fastr.planning.inputoutput.SubOutput attribute)
rmem (fastr.core.target.SystemUsageInfo attribute)
RQExecution (class in fastr.plugins)
(class in fastr.resources.plugins.executionplugins.rqexecution)
Run (class in fastr.web.api)
run_command() (fastr.core.target.Target method)
(fastr.plugins.DockerTarget method)
(fastr.plugins.LocalBinaryTarget method)
(fastr.plugins.MacroTarget method)
(fastr.plugins.SingularityTarget method)
(fastr.resources.plugins.targetplugins.dockertarget.DockerTarget method)
(fastr.resources.plugins.targetplugins.localbinarytarget.LocalBinaryTarget method)
(fastr.resources.plugins.targetplugins.macrotarget.MacroTarget method)
(fastr.resources.plugins.targetplugins.singularitytarget.SingularityTarget method)
run_finished (fastr.helpers.events.EventType attribute)
run_finished() (fastr.plugins.PimReporter method)
(fastr.plugins.SimpleReport method)
(fastr.plugins.reportingplugin.ReportingPlugin method)
(fastr.resources.plugins.reportingplugins.pimreporter.PimReporter method)
(fastr.resources.plugins.reportingplugins.simplereport.SimpleReport method)
run_job() (fastr.plugins.RQExecution class method)
(fastr.resources.plugins.executionplugins.rqexecution.RQExecution class method)
(in module fastr.resources.plugins.executionplugins.blockingexecution)
(in module fastr.resources.plugins.executionplugins.processpoolexecution)
run_network() (fastr.web.api.Run method)
run_pylint() (in module fastr.utils.cmd.pylint)
run_started (fastr.helpers.events.EventType attribute)
run_started() (fastr.plugins.PimReporter method)
(fastr.plugins.reportingplugin.ReportingPlugin method)
(fastr.resources.plugins.reportingplugins.pimreporter.PimReporter method)
RunApi (class in fastr.web.api)
runapp() (in module fastr.web.run)
RunListApi (class in fastr.web.api)
running (fastr.execution.job.JobState attribute)
S
S3Filesystem (class in fastr.plugins)
(class in fastr.resources.plugins.ioplugins.s3filesystem)
SampleBaseId (class in fastr.core.samples)
SampleCollection (class in fastr.core.samples)
SampleId (class in fastr.core.samples)
SampleIndex (class in fastr.core.samples)
SampleItem (class in fastr.core.samples)
SampleItemBase (class in fastr.core.samples)
SamplePayload (class in fastr.core.samples)
samples (fastr.core.samples.ContainsSamples attribute)
(fastr.execution.inputoutputrun.OutputRun attribute)
(fastr.execution.inputoutputrun.SubOutputRun attribute)
(fastr.planning.inputoutput.SubOutput attribute)
SampleValue (class in fastr.core.samples)
save() (fastr.api.Network method)
save_gpickle() (in module fastr.helpers.iohelpers)
save_json() (in module fastr.helpers.iohelpers)
save_version() (in module fastr.version)
SBATCH (fastr.plugins.SlurmExecution attribute)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution attribute)
SCANCEL (fastr.plugins.SlurmExecution attribute)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution attribute)
schemadir (fastr.helpers.configmanager.Config attribute)
SchemaPrinter (class in fastr.helpers.schematotable)
scheme (fastr.core.ioplugin.IOPlugin attribute)
(fastr.core.vfs.VirtualFileSystem attribute)
(fastr.plugins.CommaSeperatedValueFile attribute)
(fastr.plugins.FileSystem attribute)
(fastr.plugins.HTTPPlugin attribute)
(fastr.plugins.Null attribute)
(fastr.plugins.Reference attribute)
(fastr.plugins.S3Filesystem attribute)
(fastr.plugins.VirtualFileSystem attribute)
(fastr.plugins.VirtualFileSystemRegularExpression attribute)
(fastr.plugins.VirtualFileSystemValueList attribute)
(fastr.plugins.XNATStorage attribute)
(fastr.resources.plugins.ioplugins.commaseperatedvaluefile.CommaSeperatedValueFile attribute)
(fastr.resources.plugins.ioplugins.filesystem.FileSystem attribute)
(fastr.resources.plugins.ioplugins.httpplugin.HTTPPlugin attribute)
(fastr.resources.plugins.ioplugins.null.Null attribute)
(fastr.resources.plugins.ioplugins.reference.Reference attribute)
(fastr.resources.plugins.ioplugins.s3filesystem.S3Filesystem attribute)
(fastr.resources.plugins.ioplugins.virtualfilesystem.VirtualFileSystem attribute)
(fastr.resources.plugins.ioplugins.virtualfilesystemregularexpression.VirtualFileSystemRegularExpression attribute)
(fastr.resources.plugins.ioplugins.virtualfilesystemvaluelist.VirtualFileSystemValueList attribute)
(fastr.resources.plugins.ioplugins.xnatstorage.XNATStorage attribute)
SCONTROL (fastr.plugins.SlurmExecution attribute)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution attribute)
send_job() (fastr.plugins.DRMAAExecution method)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution method)
sequence_part() (fastr.core.samples.SampleValue method)
serialize() (fastr.core.provenance.Provenance method)
server (fastr.plugins.XNATStorage attribute)
(fastr.resources.plugins.ioplugins.xnatstorage.XNATStorage attribute)
set_data() (fastr.execution.networkrun.NetworkRun method)
(fastr.execution.sinknoderun.SinkNodeRun method)
(fastr.execution.sourcenoderun.ConstantNodeRun method)
(fastr.execution.sourcenoderun.SourceNodeRun method)
(fastr.planning.node.ConstantNode method)
(fastr.planning.node.SourceNode method)
set_field() (fastr.helpers.configmanager.Config method)
set_result() (fastr.execution.flownoderun.AdvancedFlowNodeRun method)
(fastr.execution.flownoderun.FlowNodeRun method)
(fastr.execution.noderun.NodeRun method)
(fastr.execution.sinknoderun.SinkNodeRun method)
setup() (fastr.core.ioplugin.IOPlugin method)
(fastr.core.vfs.VirtualFileSystem method)
(fastr.resources.plugins.ioplugins.test.test_virtualfilesystem.TestVFS method)
sha1_checksum() (in module fastr.helpers.checksum)
show_jobs() (fastr.plugins.executionplugin.ExecutionPlugin method)
shutdown() (in module fastr.web.views)
shutdown_server() (in module fastr.web.views)
signal_dependent_jobs() (fastr.plugins.executionplugin.ExecutionPlugin method)
SimpleReport (class in fastr.plugins)
(class in fastr.resources.plugins.reportingplugins.simplereport)
SINGULARITY_BIN (fastr.plugins.SingularityTarget attribute)
(fastr.resources.plugins.targetplugins.singularitytarget.SingularityTarget attribute)
SingularityTarget (class in fastr.plugins)
(class in fastr.resources.plugins.targetplugins.singularitytarget)
sink() (in module fastr.utils.cmd.sink)
SINK_DUMP_FILE_NAME (fastr.execution.networkrun.NetworkRun attribute)
(fastr.planning.network.Network attribute)
SinkJob (class in fastr.execution.job)
sinklist (fastr.execution.networkrun.NetworkRun attribute)
SinkNode (class in fastr.planning.node)
SinkNodeRun (class in fastr.execution.sinknoderun)
size (fastr.core.dimension.Dimension attribute)
(fastr.core.dimension.HasDimensions attribute)
(fastr.execution.inputoutputrun.SourceOutputRun attribute)
(fastr.execution.linkrun.LinkRun attribute)
slurm_job_check_interval (fastr.helpers.configmanager.Config attribute)
slurm_partition (fastr.helpers.configmanager.Config attribute)
SlurmExecution (class in fastr.plugins)
(class in fastr.resources.plugins.executionplugins.slurmexecution)
solve_broadcast() (fastr.planning.inputgroup.InputGroup class method)
source (fastr.core.dimension.ForwardsDimensions attribute)
(fastr.execution.inputoutputrun.InputRun attribute)
(fastr.execution.inputoutputrun.SubInputRun attribute)
(fastr.execution.linkrun.LinkRun attribute)
(fastr.planning.inputoutput.Input attribute)
(fastr.planning.inputoutput.SubInput attribute)
(fastr.planning.link.Link attribute)
source() (in module fastr.utils.cmd.source)
SOURCE_DUMP_FILE_NAME (fastr.execution.networkrun.NetworkRun attribute)
(fastr.planning.network.Network attribute)
source_job_limit (fastr.helpers.configmanager.Config attribute)
source_output (fastr.execution.inputoutputrun.SubInputRun attribute)
(fastr.planning.inputoutput.SubInput attribute)
sourcegroup (fastr.execution.sourcenoderun.SourceNodeRun attribute)
(fastr.planning.node.SourceNode attribute)
SourceJob (class in fastr.execution.job)
sourcelist (fastr.execution.networkrun.NetworkRun attribute)
SourceNode (class in fastr.planning.node)
SourceNodeRun (class in fastr.execution.sourcenoderun)
SourceOutput (class in fastr.planning.inputoutput)
SourceOutputRun (class in fastr.execution.inputoutputrun)
spec_fields (fastr.plugins.DRMAAExecution attribute)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution attribute)
split() (in module fastr.data.url)
SQUEUE (fastr.plugins.SlurmExecution attribute)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution attribute)
SQUEUE_FORMAT (fastr.plugins.SlurmExecution attribute)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution attribute)
status (fastr.core.version.Version attribute)
(fastr.execution.job.Job attribute)
(fastr.execution.linkrun.LinkRun attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.planning.link.Link attribute)
(fastr.planning.node.Node attribute)
status() (fastr.web.api.Run method)
STATUS_MAPPING (fastr.plugins.SlurmExecution attribute)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution attribute)
STATUS_TYPES (fastr.resources.plugins.reportingplugins.pimreporter.PimAPIv2 attribute)
StatusApi (class in fastr.web.api)
STDERR_DUMP (fastr.execution.job.Job attribute)
stderrfile (fastr.execution.job.Job attribute)
stderrurl (fastr.execution.job.Job attribute)
stdout (in module fastr.plugins)
STDOUT_DUMP (fastr.execution.job.Job attribute)
StdoutCollector (class in fastr.resources.plugins.collectorplugins.stdoutcollector)
stdoutfile (fastr.execution.job.Job attribute)
stdouturl (fastr.execution.job.Job attribute)
store() (fastr.helpers.filesynchelper.FileSyncHelper method)
String (class in fastr.resources.datatypes.String)
StrongrExecution (class in fastr.plugins)
(class in fastr.resources.plugins.executionplugins.strongrexecution)
SubInput (class in fastr.planning.inputoutput)
SubInputRun (class in fastr.execution.inputoutputrun)
submit_jobs() (fastr.plugins.DRMAAExecution method)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution method)
SubOutput (class in fastr.planning.inputoutput)
SubOutputRun (class in fastr.execution.inputoutputrun)
SubprocessBasedTarget (class in fastr.core.target)
substitute() (fastr.execution.job.SinkJob method)
SubUrl (class in fastr.web.api)
suffix (fastr.core.version.Version attribute)
SUPPORTED_APIS (fastr.plugins.PimReporter attribute)
(fastr.resources.plugins.reportingplugins.pimreporter.PimReporter attribute)
SUPPORTS_CANCEL (fastr.plugins.DRMAAExecution attribute)
(fastr.plugins.SlurmExecution attribute)
(fastr.plugins.executionplugin.ExecutionPlugin attribute)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution attribute)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution attribute)
SUPPORTS_DEPENDENCY (fastr.plugins.DRMAAExecution attribute)
(fastr.plugins.SlurmExecution attribute)
(fastr.plugins.executionplugin.ExecutionPlugin attribute)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution attribute)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution attribute)
SUPPORTS_HOLD_RELEASE (fastr.plugins.DRMAAExecution attribute)
(fastr.plugins.SlurmExecution attribute)
(fastr.plugins.executionplugin.ExecutionPlugin attribute)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution attribute)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution attribute)
swap() (fastr.execution.environmentmodules.EnvironmentModules method)
switch_sample_sink() (in module fastr.utils.cmd.trace)
sync() (fastr.execution.environmentmodules.EnvironmentModules method)
systemdir (fastr.helpers.configmanager.Config attribute)
SystemUsageInfo (class in fastr.core.target)
T
tags (fastr.core.tool.Tool attribute)
Target (class in fastr.core.target)
target (fastr.core.tool.Tool attribute)
(fastr.datatypes.Deferred attribute)
(fastr.execution.linkrun.LinkRun attribute)
(fastr.planning.link.Link attribute)
TargetManager (class in fastr.plugins.managers.targetmanager)
TargetResult (class in fastr.core.target)
test() (fastr.core.interface.Interface class method)
(fastr.core.target.Target class method)
(fastr.core.tool.Tool method)
(fastr.datatypes.BaseDataType class method)
(fastr.planning.network.Network class method)
(fastr.plugins.BlockingExecution class method)
(fastr.plugins.DRMAAExecution class method)
(fastr.plugins.ElasticsearchReporter class method)
(fastr.plugins.LinearExecution class method)
(fastr.plugins.MacroTarget class method)
(fastr.plugins.NipypeInterface class method)
(fastr.plugins.ProcessPoolExecution class method)
(fastr.plugins.RQExecution class method)
(fastr.plugins.S3Filesystem class method)
(fastr.plugins.SingularityTarget class method)
(fastr.plugins.SlurmExecution class method)
(fastr.plugins.StrongrExecution class method)
(fastr.resources.plugins.executionplugins.blockingexecution.BlockingExecution class method)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution class method)
(fastr.resources.plugins.executionplugins.linearexecution.LinearExecution class method)
(fastr.resources.plugins.executionplugins.processpoolexecution.ProcessPoolExecution class method)
(fastr.resources.plugins.executionplugins.rqexecution.RQExecution class method)
(fastr.resources.plugins.executionplugins.slurmexecution.SlurmExecution class method)
(fastr.resources.plugins.executionplugins.strongrexecution.StrongrExecution class method)
(fastr.resources.plugins.interfaceplugins.nipypeinterface.NipypeInterface class method)
(fastr.resources.plugins.ioplugins.s3filesystem.S3Filesystem class method)
(fastr.resources.plugins.reportingplugins.elasticsearchreporter.ElasticsearchReporter class method)
(fastr.resources.plugins.targetplugins.macrotarget.MacroTarget class method)
(fastr.resources.plugins.targetplugins.singularitytarget.SingularityTarget class method)
test_ioplugins_pull_source_data_mhd() (fastr.resources.plugins.ioplugins.test.test_virtualfilesystem.TestVFS method)
test_ioplugins_pull_source_data_niigz() (fastr.resources.plugins.ioplugins.test.test_virtualfilesystem.TestVFS method)
test_ioplugins_pull_source_data_no_extension() (fastr.resources.plugins.ioplugins.test.test_virtualfilesystem.TestVFS method)
test_ioplugins_push_sink_data_mhd() (fastr.resources.plugins.ioplugins.test.test_virtualfilesystem.TestVFS method)
test_ioplugins_push_sink_data_niigz() (fastr.resources.plugins.ioplugins.test.test_virtualfilesystem.TestVFS method)
test_spec (fastr.core.tool.Tool attribute)
test_tool() (fastr.core.tool.Tool class method)
TestVFS (class in fastr.resources.plugins.ioplugins.test.test_virtualfilesystem)
TifImageFile (class in fastr.resources.datatypes.TifImageFile)
time (fastr.api.ResourceLimit attribute)
(fastr.core.resourcelimit.ResourceLimit attribute)
timestamp (fastr.core.target.SystemUsageInfo attribute)
tmpurl (fastr.execution.job.Job attribute)
(fastr.execution.job.SinkJob attribute)
todict() (fastr.plugins.managers.objectmanager.ObjectManager method)
Tool (class in fastr.core.tool)
tool (fastr.execution.job.Job attribute)
(fastr.execution.noderun.NodeRun attribute)
(fastr.planning.node.Node attribute)
tool() (in module fastr.utils.cmd.test)
(in module fastr.web.views)
TOOL_REFERENCE_FILE_NAME (fastr.core.tool.Tool attribute)
TOOL_RESULT_FILE_NAME (fastr.core.tool.Tool attribute)
ToolApi (class in fastr.web.api)
toollist (fastr.utils.cmd.upgrade.FastrNamespaceType attribute)
ToolListApi (class in fastr.web.api)
ToolManager (class in fastr.plugins.managers.toolmanager)
tools (fastr attribute)
tools_path (fastr.helpers.configmanager.Config attribute)
toolversions() (fastr.plugins.managers.toolmanager.ToolManager method)
TORQUE_NATIVE_SPEC (fastr.plugins.DRMAAExecution attribute)
(fastr.resources.plugins.executionplugins.drmaaexecution.DRMAAExecution attribute)
tostring_modvalue() (fastr.execution.environmentmodules.EnvironmentModules static method)
totuple_modvalue() (fastr.execution.environmentmodules.EnvironmentModules static method)
translate_argument() (fastr.execution.job.Job class method)
translate_output_results() (fastr.execution.job.Job static method)
translate_results() (fastr.execution.job.Job method)
TxtFile (class in fastr.resources.datatypes.TxtFile)
TypeGroup (class in fastr.datatypes)
typelist (fastr.utils.cmd.upgrade.FastrNamespaceType attribute)
types (fastr attribute)
types_path (fastr.helpers.configmanager.Config attribute)
U
unload() (fastr.execution.environmentmodules.EnvironmentModules method)
unmerge() (fastr.planning.inputgroupcombiner.BaseInputGroupCombiner method)
(fastr.planning.inputgroupcombiner.DefaultInputGroupCombiner method)
(fastr.planning.inputgroupcombiner.MergingInputGroupCombiner method)
unregister_signals() (fastr.execution.networkrun.NetworkRun method)
UnsignedInt (class in fastr.resources.datatypes.UnsignedInt)
update() (fastr.helpers.configmanager.EmptyDefault method)
(fastr.planning.inputgroupcombiner.BaseInputGroupCombiner method)
(fastr.planning.inputgroupcombiner.MergingInputGroupCombiner method)
update_input_groups() (fastr.execution.noderun.NodeRun method)
(fastr.planning.node.Node method)
update_job_result() (in module fastr.web.api)
update_size() (fastr.core.dimension.Dimension method)
update_status() (in module fastr.web.api)
upgrade() (in module fastr.utils.cmd.upgrade)
upload() (fastr.plugins.XNATStorage static method)
(fastr.resources.plugins.ioplugins.xnatstorage.XNATStorage static method)
url (fastr.core.tool.Tool attribute)
url_to_path() (fastr.core.ioplugin.IOPlugin method)
(fastr.core.vfs.VirtualFileSystem method)
(fastr.plugins.FileSystem method)
(fastr.plugins.managers.iopluginmanager.IOPluginManager method)
(fastr.resources.plugins.ioplugins.filesystem.FileSystem method)
URLType (class in fastr.datatypes)
usage_type (fastr.core.target.ProcessUsageCollection attribute)
userdir (fastr.helpers.configmanager.Config attribute)
V
valid (fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.URLType attribute)
(fastr.execution.inputoutputrun.OutputRun attribute)
(fastr.execution.sourcenoderun.SourceNodeRun attribute)
(fastr.planning.inputoutput.Output attribute)
(fastr.planning.node.SourceNode attribute)
validate() (fastr.core.cardinality.AnyCardinalitySpec method)
(fastr.core.cardinality.CardinalitySpec method)
validate_results() (fastr.execution.job.Job method)
(fastr.execution.job.SinkJob method)
(fastr.execution.job.SourceJob method)
value (fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.Deferred attribute)
(fastr.resources.datatypes.Boolean.Boolean attribute)
(fastr.resources.datatypes.Float.Float attribute)
(fastr.resources.datatypes.Int.Int attribute)
(fastr.resources.datatypes.UnsignedInt.UnsignedInt attribute)
ValueCardinalitySpec (class in fastr.core.cardinality)
ValueType (class in fastr.datatypes)
verify_resource_loading() (in module fastr.utils.verify)
verify_tool() (in module fastr.utils.verify)
Version (class in fastr.core.version)
version (fastr.api.Network attribute)
(fastr.core.tool.Tool attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.EnumType attribute)
version_matcher (fastr.core.version.Version attribute)
VirtualFileSystem (class in fastr.core.vfs)
(class in fastr.plugins)
(class in fastr.resources.plugins.ioplugins.virtualfilesystem)
VirtualFileSystemRegularExpression (class in fastr.plugins)
(class in fastr.resources.plugins.ioplugins.virtualfilesystemregularexpression)
VirtualFileSystemValueList (class in fastr.plugins)
(class in fastr.resources.plugins.ioplugins.virtualfilesystemvaluelist)
vmem (fastr.core.target.SystemUsageInfo attribute)
W
wait_for_file() (fastr.helpers.filesynchelper.FileSyncHelper method)
wait_for_job() (fastr.helpers.filesynchelper.FileSyncHelper method)
wait_for_pickle() (fastr.helpers.filesynchelper.FileSyncHelper method)
wait_for_vfs_url() (fastr.helpers.filesynchelper.FileSyncHelper method)
warn_develop (fastr.helpers.configmanager.Config attribute)
web_hostname (fastr.helpers.configmanager.Config attribute)
web_port (fastr.helpers.configmanager.Config attribute)
web_secret_key (fastr.helpers.configmanager.Config attribute)
web_url() (fastr.helpers.configmanager.Config method)
websocket_client() (in module fastr.web.views)
which() (in module fastr.helpers.procutils)
write() (fastr.execution.job.Job method)
write_bytes (fastr.core.target.SystemUsageInfo attribute)
X
xnat (fastr.plugins.XNATStorage attribute)
(fastr.resources.plugins.ioplugins.xnatstorage.XNATStorage attribute)
XNATStorage (class in fastr.plugins)
(class in fastr.resources.plugins.ioplugins.xnatstorage)
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