Index

_

__abstractmethods__ (fastr.__init__.ConstantNode attribute) (fastr.__init__.Link attribute) (fastr.__init__.Node attribute) (fastr.__init__.SinkNode attribute) (fastr.__init__.SourceNode attribute) (fastr.core.basemanager.BaseManager attribute) (fastr.core.baseplugin.BasePlugin attribute) (fastr.core.baseplugin.Plugin attribute) (fastr.core.datatypemanager.DataTypeManager attribute) (fastr.core.dimension.ForwardsDimensions attribute) (fastr.core.dimension.HasDimensions attribute) (fastr.core.inputgroup.InputGroup attribute) (fastr.core.inputgroupcombiner.BaseInputGroupCombiner attribute) (fastr.core.inputgroupcombiner.DefaultInputGroupCombiner attribute) (fastr.core.inputgroupcombiner.MergingInputGroupCombiner attribute) (fastr.core.inputoutput.AdvancedFlowOutput attribute) (fastr.core.inputoutput.BaseInput attribute) (fastr.core.inputoutput.BaseInputOutput attribute) (fastr.core.inputoutput.BaseOutput attribute) (fastr.core.inputoutput.Input attribute) (fastr.core.inputoutput.MacroOutput attribute) (fastr.core.inputoutput.Output attribute) (fastr.core.inputoutput.SourceOutput attribute) (fastr.core.inputoutput.SubInput attribute) (fastr.core.inputoutput.SubOutput attribute) (fastr.core.interface.Interface attribute) (fastr.core.interface.InterfacePluginManager attribute) (fastr.core.ioplugin.IOPlugin attribute) (fastr.core.ioplugin.IOPluginManager attribute) (fastr.core.link.Link attribute) (fastr.core.networkmanager.NetworkManager attribute) (fastr.core.node.AdvancedFlowNode attribute) (fastr.core.node.ConstantNode attribute) (fastr.core.node.FlowNode attribute) (fastr.core.node.MacroNode attribute) (fastr.core.node.Node attribute) (fastr.core.node.SinkNode attribute) (fastr.core.node.SourceNode attribute) (fastr.core.objectmanager.ObjectManager attribute) (fastr.core.pluginmanager.BasePluginManager attribute) (fastr.core.pluginmanager.PluginManager attribute) (fastr.core.pluginmanager.PluginSubManager attribute) (fastr.core.pluginmanager.PluginsView attribute) (fastr.core.samples.ContainsSamples attribute) (fastr.core.samples.HasSamples attribute) (fastr.core.samples.SampleCollection attribute) (fastr.core.samples.SampleValue attribute) (fastr.core.target.ProcessUsageCollection attribute) (fastr.core.target.SubprocessBasedTarget attribute) (fastr.core.target.Target attribute) (fastr.core.target.TargetManager attribute) (fastr.core.toolmanager.ToolManager attribute) (fastr.core.updateable.Updateable attribute) (fastr.datatypes.AnalyzeImageFile attribute) (fastr.datatypes.AnyFile attribute) (fastr.datatypes.AnyType attribute) (fastr.datatypes.BaseDataType attribute) (fastr.datatypes.Boolean attribute) (fastr.datatypes.DataType attribute) (fastr.datatypes.Deferred attribute) (fastr.datatypes.Directory attribute) (fastr.datatypes.EnumType attribute) (fastr.datatypes.FilePrefix attribute) (fastr.datatypes.Float attribute) (fastr.datatypes.ITKImageFile attribute) (fastr.datatypes.Int attribute) (fastr.datatypes.JsonFile attribute) (fastr.datatypes.MetaImageFile attribute) (fastr.datatypes.NiftiImageFile attribute) (fastr.datatypes.NiftiImageFileCompressed attribute) (fastr.datatypes.NiftiImageFileUncompressed attribute) (fastr.datatypes.NrrdImageFile attribute) (fastr.datatypes.Number attribute) (fastr.datatypes.ProvNFile attribute) (fastr.datatypes.String attribute) (fastr.datatypes.TifImageFile attribute) (fastr.datatypes.TxtFile attribute) (fastr.datatypes.TypeGroup attribute) (fastr.datatypes.URLType attribute) (fastr.datatypes.UnsignedInt attribute) (fastr.datatypes.ValueType attribute) (fastr.execution.executionpluginmanager.ExecutionPlugin attribute) (fastr.execution.executionpluginmanager.ExecutionPluginManager attribute) (fastr.execution.flownoderun.AdvancedFlowNodeRun attribute) (fastr.execution.flownoderun.FlowNodeRun attribute) (fastr.execution.inputoutputrun.AdvancedFlowOutputRun attribute) (fastr.execution.inputoutputrun.BaseInputRun attribute) (fastr.execution.inputoutputrun.InputRun attribute) (fastr.execution.inputoutputrun.MacroOutputRun attribute) (fastr.execution.inputoutputrun.OutputRun attribute) (fastr.execution.inputoutputrun.SourceOutputRun attribute) (fastr.execution.inputoutputrun.SubInputRun attribute) (fastr.execution.inputoutputrun.SubOutputRun attribute) (fastr.execution.linkrun.LinkRun attribute) (fastr.execution.macronoderun.MacroNodeRun attribute) (fastr.execution.noderun.NodeRun attribute) (fastr.execution.sinknoderun.SinkNodeRun attribute) (fastr.execution.sourcenoderun.ConstantNodeRun attribute) (fastr.execution.sourcenoderun.SourceNodeRun attribute) (fastr.plugins.BlockingExecution attribute) (fastr.plugins.CommaSeperatedValueFile attribute) (fastr.plugins.CrossValidation attribute) (fastr.plugins.DRMAAExecution attribute) (fastr.plugins.DockerTarget attribute) (fastr.plugins.FastrInterface attribute) (fastr.plugins.FileSystem attribute) (fastr.plugins.FlowInterface attribute) (fastr.plugins.LinearExecution attribute) (fastr.plugins.LocalBinaryTarget attribute) (fastr.plugins.NipypeInterface attribute) (fastr.plugins.Null attribute) (fastr.plugins.ProcessPoolExecution attribute) (fastr.plugins.RQExecution attribute) (fastr.plugins.Reference attribute) (fastr.plugins.SingularityTarget attribute) (fastr.plugins.SlurmExecution attribute) (fastr.plugins.StrongrExecution attribute) (fastr.plugins.VirtualFileSystem attribute) (fastr.plugins.VirtualFileSystemRegularExpression attribute) (fastr.plugins.VirtualFileSystemValueList attribute) (fastr.plugins.XNATStorage attribute) (fastr.utils.pim_publisher.BasePimAPI attribute) __add__() (fastr.configmanager.EmptyDefault method) (fastr.core.samples.SampleBaseId method) (fastr.core.samples.SampleItemBase method) (fastr.core.samples.SamplePayload method) (fastr.core.samples.SampleValue method) __contains__() (fastr.core.objectmanager.ObjectManager method) (fastr.core.samples.HasSamples method) (fastr.core.samples.SampleCollection method) __dataschemafile__ (fastr.__init__.ConstantNode attribute) (fastr.__init__.Link attribute) (fastr.__init__.Network attribute) (fastr.__init__.Node attribute) (fastr.__init__.SinkNode attribute) (fastr.__init__.SourceNode attribute) (fastr.core.link.Link attribute) (fastr.core.network.Network attribute) (fastr.core.node.ConstantNode attribute) (fastr.core.node.Node attribute) (fastr.core.node.SinkNode attribute) (fastr.core.node.SourceNode attribute) (fastr.core.tool.Tool attribute) (fastr.execution.linkrun.LinkRun attribute) (fastr.execution.noderun.NodeRun attribute) (fastr.execution.sinknoderun.SinkNodeRun attribute) (fastr.execution.sourcenoderun.ConstantNodeRun attribute) (fastr.execution.sourcenoderun.SourceNodeRun attribute) (fastr.plugins.FastrInterface attribute) (fastr.plugins.FlowInterface attribute) __del__() (fastr.execution.executionpluginmanager.ExecutionPlugin method) __delitem__() (fastr.configmanager.EmptyDefault method) (fastr.core.basemanager.BaseManager method) (fastr.core.inputgroup.InputGroup method) (fastr.core.pluginmanager.PluginsView method) (fastr.core.samples.SampleCollection method) (fastr.core.samples.SampleValue method) __dict__ (fastr.configmanager.Config attribute) (fastr.configmanager.EmptyDefault attribute) (fastr.core.baseplugin.BasePlugin attribute) (fastr.core.dimension.Dimension attribute) (fastr.core.dimension.HasDimensions attribute) (fastr.core.interface.InputSpec attribute) (fastr.core.interface.InterfaceResult attribute) (fastr.core.interface.OutputSpec attribute) (fastr.core.pluginmanager.plugin_option_type attribute) (fastr.core.provenance.Provenance attribute) (fastr.core.samples.SampleBaseId attribute) (fastr.core.samples.SampleItemBase attribute) (fastr.core.serializable.PassThroughSerializer attribute) (fastr.core.serializable.Serializable attribute) (fastr.core.target.SystemUsageInfo attribute) (fastr.core.updateable.Updateable attribute) (fastr.core.version.Version attribute) (fastr.execution.environmentmodules.EnvironmentModules attribute) (fastr.execution.networkanalyzer.NetworkAnalyzer attribute) (fastr.execution.networkchunker.NetworkChunker attribute) (fastr.utils.classproperty.ClassPropertyDescriptor attribute) (fastr.utils.pim_publisher.BasePimAPI attribute) (fastr.utils.pim_publisher.PimAPI_v1 attribute) (fastr.utils.pim_publisher.PimAPI_v2 attribute) (fastr.utils.pim_publisher.PimPublisher attribute) (fastr.utils.schematotable.SchemaPrinter attribute) (fastr.web.api.Run attribute) __enter__() (fastr.core.target.Target method) (fastr.execution.executionpluginmanager.ExecutionPlugin method) (fastr.plugins.DockerTarget method) (fastr.plugins.LocalBinaryTarget method) (fastr.plugins.SingularityTarget method) __eq__() (fastr.__init__.Link method) (fastr.__init__.Network method) (fastr.__init__.Node method) (fastr.core.dimension.Dimension method) (fastr.core.inputoutput.Input method) (fastr.core.inputoutput.Output method) (fastr.core.inputoutput.SubInput method) (fastr.core.inputoutput.SubOutput method) (fastr.core.link.Link method) (fastr.core.network.Network method) (fastr.core.node.MacroNode method) (fastr.core.node.Node method) (fastr.core.tool.Tool method) (fastr.datatypes.BaseDataType method) (fastr.datatypes.Directory method) (fastr.datatypes.MetaImageFile method) (fastr.datatypes.URLType method) (fastr.execution.linkrun.LinkRun method) (fastr.execution.networkrun.NetworkRun method) (fastr.execution.noderun.NodeRun method) (fastr.execution.sourcenoderun.SourceNodeRun method) (fastr.plugins.FastrInterface method) (fastr.plugins.FlowInterface method) (fastr.plugins.NipypeInterface method) __exit__() (fastr.core.target.Target method) (fastr.execution.executionpluginmanager.ExecutionPlugin method) (fastr.plugins.DockerTarget method) (fastr.plugins.LocalBinaryTarget method) (fastr.plugins.SingularityTarget method) __get__() (fastr.utils.classproperty.ClassPropertyDescriptor method) __getattr__() (fastr.core.pluginmanager.LazyModule method) __getitem__() (fastr.__init__.Network method) (fastr.configmanager.EmptyDefault method) (fastr.core.basemanager.BaseManager method) (fastr.core.inputgroup.InputGroup method) (fastr.core.inputoutput.Input method) (fastr.core.inputoutput.Output method) (fastr.core.inputoutput.SourceOutput method) (fastr.core.inputoutput.SubInput method) (fastr.core.inputoutput.SubOutput method) (fastr.core.network.Network method) (fastr.core.objectmanager.ObjectManager method) (fastr.core.pluginmanager.BasePluginManager method) (fastr.core.pluginmanager.PluginsView method) (fastr.core.samples.ContainsSamples method) (fastr.core.samples.HasSamples method) (fastr.core.samples.SampleCollection method) (fastr.core.samples.SampleValue method) (fastr.core.target.ProcessUsageCollection method) (fastr.execution.inputoutputrun.InputRun method) (fastr.execution.inputoutputrun.OutputRun method) (fastr.execution.inputoutputrun.SourceOutputRun method) (fastr.execution.inputoutputrun.SubInputRun method) (fastr.execution.inputoutputrun.SubOutputRun method) (fastr.execution.linkrun.LinkRun method) (fastr.execution.networkrun.NetworkRun method) __getnewargs__() (fastr.core.pluginmanager.plugin_option_type method) (fastr.core.samples.SampleItemBase method) (fastr.core.target.SystemUsageInfo method) __getstate__() (fastr.__init__.ConstantNode method) (fastr.__init__.Link method) (fastr.__init__.Network method) (fastr.__init__.Node method) (fastr.__init__.SinkNode method) (fastr.__init__.SourceNode method) (fastr.core.inputoutput.BaseInputOutput method) (fastr.core.inputoutput.Input method) (fastr.core.inputoutput.Output method) (fastr.core.inputoutput.SubInput method) (fastr.core.inputoutput.SubOutput method) (fastr.core.interface.Interface method) (fastr.core.link.Link method) (fastr.core.network.Network method) (fastr.core.node.ConstantNode method) (fastr.core.node.MacroNode method) (fastr.core.node.Node method) (fastr.core.node.SinkNode method) (fastr.core.node.SourceNode method) (fastr.core.pluginmanager.plugin_option_type method) (fastr.core.samples.SampleValue method) (fastr.core.serializable.Serializable method) (fastr.core.target.SystemUsageInfo method) (fastr.core.tool.Tool method) (fastr.core.updateable.Updateable method) (fastr.datatypes.BaseDataType method) (fastr.datatypes.Deferred method) (fastr.execution.inputoutputrun.InputRun method) (fastr.execution.inputoutputrun.OutputRun method) (fastr.execution.inputoutputrun.SubInputRun method) (fastr.execution.inputoutputrun.SubOutputRun method) (fastr.execution.job.Job method) (fastr.execution.linkrun.LinkRun method) (fastr.execution.macronoderun.MacroNodeRun method) (fastr.execution.networkrun.NetworkRun method) (fastr.execution.noderun.NodeRun method) (fastr.execution.sinknoderun.SinkNodeRun method) (fastr.execution.sourcenoderun.ConstantNodeRun method) (fastr.execution.sourcenoderun.SourceNodeRun method) (fastr.plugins.FastrInterface method) (fastr.plugins.FlowInterface method) (fastr.plugins.NipypeInterface method) __iadd__() (fastr.configmanager.EmptyDefault method) __init__() (fastr.__init__.ConstantNode method) (fastr.__init__.Link method) (fastr.__init__.Network method) (fastr.__init__.Node method) (fastr.__init__.SinkNode method) (fastr.__init__.SourceNode method) (fastr.configmanager.Config method) (fastr.configmanager.EmptyDefault method) (fastr.core.basemanager.BaseManager method) (fastr.core.baseplugin.BasePlugin method) (fastr.core.datatypemanager.DataTypeManager method) (fastr.core.dimension.Dimension method) (fastr.core.inputgroup.InputGroup method) (fastr.core.inputgroupcombiner.BaseInputGroupCombiner method) (fastr.core.inputgroupcombiner.MergingInputGroupCombiner method) (fastr.core.inputoutput.BaseInput method) (fastr.core.inputoutput.BaseInputOutput method) (fastr.core.inputoutput.BaseOutput method) (fastr.core.inputoutput.Input method) (fastr.core.inputoutput.Output method) (fastr.core.inputoutput.SourceOutput method) (fastr.core.inputoutput.SubInput method) (fastr.core.inputoutput.SubOutput method) (fastr.core.interface.InterfacePluginManager method) (fastr.core.interface.InterfaceResult method) (fastr.core.ioplugin.IOPlugin method) (fastr.core.ioplugin.IOPluginManager method) (fastr.core.link.Link method) (fastr.core.network.Network method) (fastr.core.node.ConstantNode method) (fastr.core.node.FlowNode method) (fastr.core.node.MacroNode method) (fastr.core.node.Node method) (fastr.core.node.SinkNode method) (fastr.core.node.SourceNode method) (fastr.core.objectmanager.ObjectManager method) (fastr.core.pluginmanager.BasePluginManager method) (fastr.core.pluginmanager.LazyModule method) (fastr.core.pluginmanager.PluginManager method) (fastr.core.pluginmanager.PluginSubManager method) (fastr.core.pluginmanager.PluginsView method) (fastr.core.provenance.Provenance method) (fastr.core.samples.SampleCollection method) (fastr.core.samples.SampleValue method) (fastr.core.target.ProcessUsageCollection method) (fastr.core.target.TargetManager method) (fastr.core.tool.Tool method) (fastr.core.updateable.Updateable method) (fastr.datatypes.BaseDataType method) (fastr.datatypes.DataType method) (fastr.datatypes.Deferred method) (fastr.datatypes.EnumType method) (fastr.datatypes.TypeGroup method) (fastr.datatypes.URLType method) (fastr.datatypes.ValueType method) (fastr.exceptions.FastrError method) (fastr.exceptions.FastrExecutableNotFoundError method) (fastr.exceptions.FastrScriptNotFoundError method) (fastr.exceptions.FastrSerializationError method) (fastr.execution.environmentmodules.EnvironmentModules method) (fastr.execution.executionpluginmanager.ExecutionPlugin method) (fastr.execution.executionpluginmanager.ExecutionPluginManager method) (fastr.execution.inputoutputrun.BaseInputRun method) (fastr.execution.inputoutputrun.InputRun method) (fastr.execution.inputoutputrun.OutputRun method) (fastr.execution.inputoutputrun.SourceOutputRun method) (fastr.execution.inputoutputrun.SubInputRun method) (fastr.execution.inputoutputrun.SubOutputRun method) (fastr.execution.job.InlineJob method) (fastr.execution.job.Job method) (fastr.execution.job.SinkJob method) (fastr.execution.linkrun.LinkRun method) (fastr.execution.macronoderun.MacroNodeRun method) (fastr.execution.networkchunker.DefaultNetworkChunker method) (fastr.execution.networkrun.NetworkRun method) (fastr.execution.noderun.NodeRun method) (fastr.execution.sinknoderun.SinkNodeRun method) (fastr.execution.sourcenoderun.ConstantNodeRun method) (fastr.execution.sourcenoderun.SourceNodeRun method) (fastr.plugins.BlockingExecution method) (fastr.plugins.CommaSeperatedValueFile method) (fastr.plugins.DRMAAExecution method) (fastr.plugins.DockerTarget method) (fastr.plugins.FastrInterface method) (fastr.plugins.FileSystem method) (fastr.plugins.FlowInterface method) (fastr.plugins.LinearExecution method) (fastr.plugins.LocalBinaryTarget method) (fastr.plugins.NipypeInterface method) (fastr.plugins.Null method) (fastr.plugins.ProcessPoolExecution method) (fastr.plugins.RQExecution method) (fastr.plugins.Reference method) (fastr.plugins.SingularityTarget method) (fastr.plugins.SlurmExecution method) (fastr.plugins.StrongrExecution method) (fastr.plugins.VirtualFileSystem method) (fastr.plugins.VirtualFileSystemRegularExpression method) (fastr.plugins.VirtualFileSystemValueList method) (fastr.plugins.XNATStorage method) (fastr.utils.classproperty.ClassPropertyDescriptor method) (fastr.utils.filesynchelper.FileSyncHelper method) (fastr.utils.jsonschemaparser.FastrRefResolver method) (fastr.utils.pim_publisher.PimAPI_v1 method) (fastr.utils.pim_publisher.PimAPI_v2 method) (fastr.utils.pim_publisher.PimPublisher method) (fastr.utils.schematotable.SchemaPrinter method) (fastr.web.api.ObjectUrl method) (fastr.web.api.Run method) (fastr.web.api.SubUrl method) __iter__() (fastr.core.basemanager.BaseManager method) (fastr.core.inputgroupcombiner.BaseInputGroupCombiner method) (fastr.core.inputoutput.BaseInputOutput method) (fastr.core.ioplugin.IOPluginManager method) (fastr.core.pluginmanager.PluginsView method) (fastr.core.samples.HasSamples method) (fastr.core.samples.SampleCollection method) (fastr.core.samples.SampleValue method) __keytransform__() (fastr.core.basemanager.BaseManager method) (fastr.core.datatypemanager.DataTypeManager method) (fastr.core.ioplugin.IOPluginManager method) (fastr.core.objectmanager.ObjectManager method) __len__() (fastr.core.basemanager.BaseManager method) (fastr.core.inputoutput.SubOutput method) (fastr.core.pluginmanager.PluginsView method) (fastr.core.samples.SampleCollection method) (fastr.core.samples.SampleValue method) (fastr.core.target.ProcessUsageCollection method) (fastr.execution.inputoutputrun.SubOutputRun method) __lshift__() (fastr.core.inputoutput.BaseInput method)

__metaclass__ (fastr.__init__.Node attribute) (fastr.core.basemanager.BaseManager attribute) (fastr.core.baseplugin.BasePlugin attribute) (fastr.core.dimension.HasDimensions attribute) (fastr.core.inputgroup.InputGroup attribute) (fastr.core.inputgroupcombiner.BaseInputGroupCombiner attribute) (fastr.core.interface.Interface attribute) (fastr.core.ioplugin.IOPlugin attribute) (fastr.core.node.Node attribute) (fastr.core.samples.HasSamples attribute) (fastr.core.target.Target attribute) (fastr.core.updateable.Updateable attribute) (fastr.execution.noderun.NodeRun attribute) (fastr.utils.pim_publisher.BasePimAPI attribute) __module__ (fastr.__init__.ConstantNode attribute) (fastr.__init__.Link attribute) (fastr.__init__.Network attribute) (fastr.__init__.Node attribute) (fastr.__init__.SinkNode attribute) (fastr.__init__.SourceNode attribute) (fastr.configmanager.Config attribute) (fastr.configmanager.EmptyDefault attribute) (fastr.core.basemanager.BaseManager attribute) (fastr.core.baseplugin.BasePlugin attribute) (fastr.core.baseplugin.Plugin attribute) (fastr.core.baseplugin.PluginMeta attribute) (fastr.core.baseplugin.PluginState attribute) (fastr.core.datatypemanager.DataTypeManager attribute) (fastr.core.dimension.Dimension attribute) (fastr.core.dimension.ForwardsDimensions attribute) (fastr.core.dimension.HasDimensions attribute) (fastr.core.inputgroup.InputGroup attribute) (fastr.core.inputgroupcombiner.BaseInputGroupCombiner attribute) (fastr.core.inputgroupcombiner.DefaultInputGroupCombiner attribute) (fastr.core.inputgroupcombiner.MergingInputGroupCombiner attribute) (fastr.core.inputoutput.AdvancedFlowOutput attribute) (fastr.core.inputoutput.BaseInput attribute) (fastr.core.inputoutput.BaseInputOutput attribute) (fastr.core.inputoutput.BaseOutput attribute) (fastr.core.inputoutput.Input attribute) (fastr.core.inputoutput.MacroOutput attribute) (fastr.core.inputoutput.Output attribute) (fastr.core.inputoutput.SourceOutput attribute) (fastr.core.inputoutput.SubInput attribute) (fastr.core.inputoutput.SubOutput attribute) (fastr.core.interface.InputSpec attribute) (fastr.core.interface.Interface attribute) (fastr.core.interface.InterfacePluginManager attribute) (fastr.core.interface.InterfaceResult attribute) (fastr.core.interface.OutputSpec attribute) (fastr.core.ioplugin.IOPlugin attribute) (fastr.core.ioplugin.IOPluginManager attribute) (fastr.core.link.Link attribute) (fastr.core.network.Network attribute) (fastr.core.networkmanager.NetworkManager attribute) (fastr.core.node.AdvancedFlowNode attribute) (fastr.core.node.ConstantNode attribute) (fastr.core.node.FlowNode attribute) (fastr.core.node.InputDict attribute) (fastr.core.node.MacroNode attribute) (fastr.core.node.Node attribute) (fastr.core.node.OutputDict attribute) (fastr.core.node.SinkNode attribute) (fastr.core.node.SourceNode attribute) (fastr.core.objectmanager.ObjectManager attribute) (fastr.core.pluginmanager.BasePluginManager attribute) (fastr.core.pluginmanager.LazyModule attribute) (fastr.core.pluginmanager.PluginManager attribute) (fastr.core.pluginmanager.PluginSubManager attribute) (fastr.core.pluginmanager.PluginsView attribute) (fastr.core.pluginmanager.plugin_option_type attribute) (fastr.core.provenance.Provenance attribute) (fastr.core.samples.ContainsSamples attribute) (fastr.core.samples.HasSamples attribute) (fastr.core.samples.SampleBaseId attribute) (fastr.core.samples.SampleCollection attribute) (fastr.core.samples.SampleId attribute) (fastr.core.samples.SampleIndex attribute) (fastr.core.samples.SampleItem attribute) (fastr.core.samples.SampleItemBase attribute) (fastr.core.samples.SamplePayload attribute) (fastr.core.samples.SampleValue attribute) (fastr.core.serializable.PassThroughSerializer attribute) (fastr.core.serializable.Serializable attribute) (fastr.core.target.ProcessUsageCollection attribute) (fastr.core.target.SubprocessBasedTarget attribute) (fastr.core.target.SystemUsageInfo attribute) (fastr.core.target.Target attribute) (fastr.core.target.TargetManager attribute) (fastr.core.tool.Tool attribute) (fastr.core.toolmanager.ToolManager attribute) (fastr.core.updateable.Updateable attribute) (fastr.core.updateable.UpdateableMeta attribute) (fastr.core.version.Version attribute) (fastr.datatypes.AnalyzeImageFile attribute) (fastr.datatypes.AnyFile attribute) (fastr.datatypes.AnyType attribute) (fastr.datatypes.BaseDataType attribute) (fastr.datatypes.Boolean attribute) (fastr.datatypes.DataType attribute) (fastr.datatypes.Deferred attribute) (fastr.datatypes.Directory attribute) (fastr.datatypes.EnumType attribute) (fastr.datatypes.FilePrefix attribute) (fastr.datatypes.Float attribute) (fastr.datatypes.ITKImageFile attribute) (fastr.datatypes.Int attribute) (fastr.datatypes.JsonFile attribute) (fastr.datatypes.MetaImageFile attribute) (fastr.datatypes.NiftiImageFile attribute) (fastr.datatypes.NiftiImageFileCompressed attribute) (fastr.datatypes.NiftiImageFileUncompressed attribute) (fastr.datatypes.NrrdImageFile attribute) (fastr.datatypes.Number attribute) (fastr.datatypes.ProvNFile attribute) (fastr.datatypes.String attribute) (fastr.datatypes.TifImageFile attribute) (fastr.datatypes.TxtFile attribute) (fastr.datatypes.TypeGroup attribute) (fastr.datatypes.URLType attribute) (fastr.datatypes.UnsignedInt attribute) (fastr.datatypes.ValueType attribute) (fastr.exceptions.FastrAttributeError attribute) (fastr.exceptions.FastrCannotChangeAttributeError attribute) (fastr.exceptions.FastrCardinalityError attribute) (fastr.exceptions.FastrCollectorError attribute) (fastr.exceptions.FastrDataTypeFileNotReadable attribute) (fastr.exceptions.FastrDataTypeMismatchError attribute) (fastr.exceptions.FastrDataTypeNotAvailableError attribute) (fastr.exceptions.FastrDataTypeNotInstantiableError attribute) (fastr.exceptions.FastrDataTypeValueError attribute) (fastr.exceptions.FastrError attribute) (fastr.exceptions.FastrErrorInSubprocess attribute) (fastr.exceptions.FastrExecutableNotFoundError attribute) (fastr.exceptions.FastrExecutionError attribute) (fastr.exceptions.FastrIOError attribute) (fastr.exceptions.FastrImportError attribute) (fastr.exceptions.FastrIndexError attribute) (fastr.exceptions.FastrIndexNonexistent attribute) (fastr.exceptions.FastrKeyError attribute) (fastr.exceptions.FastrLookupError attribute) (fastr.exceptions.FastrMountUnknownError attribute) (fastr.exceptions.FastrNetworkMismatchError attribute) (fastr.exceptions.FastrNetworkUnknownError attribute) (fastr.exceptions.FastrNoValidTargetError attribute) (fastr.exceptions.FastrNodeAreadyPreparedError attribute) (fastr.exceptions.FastrNodeNotPreparedError attribute) (fastr.exceptions.FastrNodeNotValidError attribute) (fastr.exceptions.FastrNotExecutableError attribute) (fastr.exceptions.FastrNotImplementedError attribute) (fastr.exceptions.FastrOSError attribute) (fastr.exceptions.FastrObjectUnknownError attribute) (fastr.exceptions.FastrOptionalModuleNotAvailableError attribute) (fastr.exceptions.FastrOutputValidationError attribute) (fastr.exceptions.FastrParentMismatchError attribute) (fastr.exceptions.FastrPluginCapabilityNotImplemented attribute) (fastr.exceptions.FastrPluginNotAvailable attribute) (fastr.exceptions.FastrPluginNotLoaded attribute) (fastr.exceptions.FastrResultFileNotFound attribute) (fastr.exceptions.FastrScriptNotFoundError attribute) (fastr.exceptions.FastrSerializationError attribute) (fastr.exceptions.FastrSerializationIgnoreDefaultError attribute) (fastr.exceptions.FastrSerializationInvalidDataError attribute) (fastr.exceptions.FastrSerializationMethodError attribute) (fastr.exceptions.FastrSinkDataUnavailableError attribute) (fastr.exceptions.FastrSizeInvalidError attribute) (fastr.exceptions.FastrSizeMismatchError attribute) (fastr.exceptions.FastrSizeUnknownError attribute) (fastr.exceptions.FastrSourceDataUnavailableError attribute) (fastr.exceptions.FastrStateError attribute) (fastr.exceptions.FastrSubprocessNotFinished attribute) (fastr.exceptions.FastrToolNotAvailableError attribute) (fastr.exceptions.FastrToolTargetNotFound attribute) (fastr.exceptions.FastrToolUnknownError attribute) (fastr.exceptions.FastrTypeError attribute) (fastr.exceptions.FastrUnknownURLSchemeError attribute) (fastr.exceptions.FastrValueError attribute) (fastr.exceptions.FastrVersionInvalidError attribute) (fastr.exceptions.FastrVersionMismatchError attribute) (fastr.execution.environmentmodules.EnvironmentModules attribute) (fastr.execution.environmentmodules.ModuleSystem attribute) (fastr.execution.executionpluginmanager.ExecutionPlugin attribute) (fastr.execution.executionpluginmanager.ExecutionPluginManager attribute) (fastr.execution.executionpluginmanager.JobAction attribute) (fastr.execution.flownoderun.AdvancedFlowNodeRun attribute) (fastr.execution.flownoderun.FlowNodeRun attribute) (fastr.execution.inputoutputrun.AdvancedFlowOutputRun attribute) (fastr.execution.inputoutputrun.BaseInputRun attribute) (fastr.execution.inputoutputrun.InputRun attribute) (fastr.execution.inputoutputrun.MacroOutputRun attribute) (fastr.execution.inputoutputrun.OutputRun attribute) (fastr.execution.inputoutputrun.SourceOutputRun attribute) (fastr.execution.inputoutputrun.SubInputRun attribute) (fastr.execution.inputoutputrun.SubOutputRun attribute) (fastr.execution.job.InlineJob attribute) (fastr.execution.job.Job attribute) (fastr.execution.job.JobCleanupLevel attribute) (fastr.execution.job.JobState attribute) (fastr.execution.job.SinkJob attribute) (fastr.execution.job.SourceJob attribute) (fastr.execution.linkrun.LinkRun attribute) (fastr.execution.macronoderun.MacroNodeRun attribute) (fastr.execution.networkanalyzer.DefaultNetworkAnalyzer attribute) (fastr.execution.networkanalyzer.NetworkAnalyzer attribute) (fastr.execution.networkchunker.DefaultNetworkChunker attribute) (fastr.execution.networkchunker.NetworkChunker attribute) (fastr.execution.networkrun.NetworkRun attribute) (fastr.execution.noderun.NodeRun attribute) (fastr.execution.sinknoderun.SinkNodeRun attribute) (fastr.execution.sourcenoderun.ConstantNodeRun attribute) (fastr.execution.sourcenoderun.SourceNodeRun attribute) (fastr.plugins.BlockingExecution attribute) (fastr.plugins.CommaSeperatedValueFile attribute) (fastr.plugins.CrossValidation attribute) (fastr.plugins.DRMAAExecution attribute) (fastr.plugins.DockerTarget attribute) (fastr.plugins.FastrInterface attribute) (fastr.plugins.FileSystem attribute) (fastr.plugins.FlowInterface attribute) (fastr.plugins.LinearExecution attribute) (fastr.plugins.LocalBinaryTarget attribute) (fastr.plugins.NipypeInterface attribute) (fastr.plugins.Null attribute) (fastr.plugins.ProcessPoolExecution attribute) (fastr.plugins.RQExecution attribute) (fastr.plugins.Reference attribute) (fastr.plugins.SingularityTarget attribute) (fastr.plugins.SlurmExecution attribute) (fastr.plugins.StrongrExecution attribute) (fastr.plugins.VirtualFileSystem attribute) (fastr.plugins.VirtualFileSystemRegularExpression attribute) (fastr.plugins.VirtualFileSystemValueList attribute) (fastr.plugins.XNATStorage attribute) (fastr.utils.classproperty.ClassPropertyDescriptor attribute) (fastr.utils.filesynchelper.FileSyncHelper attribute) (fastr.utils.jsonschemaparser.FastrRefResolver attribute) (fastr.utils.pim_publisher.BasePimAPI attribute) (fastr.utils.pim_publisher.PimAPI_v1 attribute) (fastr.utils.pim_publisher.PimAPI_v2 attribute) (fastr.utils.pim_publisher.PimPublisher attribute) (fastr.utils.schematotable.SchemaPrinter attribute) (fastr.web.api.NetworkApi attribute) (fastr.web.api.NetworkListApi attribute) (fastr.web.api.ObjectUrl attribute) (fastr.web.api.Run attribute) (fastr.web.api.RunApi attribute) (fastr.web.api.RunListApi attribute) (fastr.web.api.StatusApi attribute) (fastr.web.api.SubUrl attribute) (fastr.web.api.ToolApi attribute) (fastr.web.api.ToolListApi attribute) __ne__() (fastr.__init__.Network method) (fastr.__init__.Node method) (fastr.core.dimension.Dimension method) (fastr.core.inputoutput.BaseInputOutput method) (fastr.core.network.Network method) (fastr.core.node.Node method) (fastr.datatypes.BaseDataType method) (fastr.execution.networkrun.NetworkRun method) __new__() (fastr.core.interface.InputSpec static method) (fastr.core.interface.OutputSpec static method) (fastr.core.pluginmanager.plugin_option_type static method) (fastr.core.samples.SampleBaseId static method) (fastr.core.samples.SampleItem static method) (fastr.core.samples.SampleItemBase static method) (fastr.core.samples.SamplePayload static method) (fastr.core.target.SystemUsageInfo static method) (fastr.core.updateable.UpdateableMeta static method) (fastr.core.version.Version static method) (fastr.datatypes.TypeGroup static method) __radd__() (fastr.configmanager.EmptyDefault method) (fastr.core.samples.SampleBaseId method) (fastr.core.samples.SampleValue method) __reduce_ex__() (fastr.datatypes.BaseDataType method) (fastr.datatypes.EnumType method) __repr__() (fastr.__init__.Link method) (fastr.__init__.Network method) (fastr.__init__.Node method) (fastr.configmanager.Config method) (fastr.core.basemanager.BaseManager method) (fastr.core.baseplugin.BasePlugin method) (fastr.core.baseplugin.PluginMeta method) (fastr.core.dimension.Dimension method) (fastr.core.inputoutput.BaseInputOutput method) (fastr.core.link.Link method) (fastr.core.network.Network method) (fastr.core.node.Node method) (fastr.core.pluginmanager.LazyModule method) (fastr.core.pluginmanager.plugin_option_type method) (fastr.core.samples.SampleBaseId method) (fastr.core.samples.SampleCollection method) (fastr.core.samples.SampleIndex method) (fastr.core.samples.SampleItemBase method) (fastr.core.samples.SampleValue method) (fastr.core.target.SystemUsageInfo method) (fastr.core.tool.Tool method) (fastr.core.version.Version method) (fastr.datatypes.BaseDataType method) (fastr.datatypes.Deferred method) (fastr.exceptions.FastrSerializationError method) (fastr.execution.environmentmodules.EnvironmentModules method) (fastr.execution.job.Job method) (fastr.execution.job.SinkJob method) (fastr.execution.job.SourceJob method) (fastr.execution.linkrun.LinkRun method) (fastr.execution.networkrun.NetworkRun method) (fastr.execution.noderun.NodeRun method) __rrshift__() (fastr.core.inputoutput.BaseInput method) __schema_type__ (fastr.web.api.ObjectUrl attribute) (fastr.web.api.SubUrl attribute) __setitem__() (fastr.configmanager.EmptyDefault method) (fastr.core.basemanager.BaseManager method) (fastr.core.inputgroup.InputGroup method) (fastr.core.inputoutput.Input method) (fastr.core.node.InputDict method) (fastr.core.node.OutputDict method) (fastr.core.pluginmanager.PluginManager method) (fastr.core.pluginmanager.PluginsView method) (fastr.core.samples.ContainsSamples method) (fastr.core.samples.SampleCollection method) (fastr.core.samples.SampleValue method) (fastr.execution.inputoutputrun.OutputRun method) (fastr.execution.inputoutputrun.SourceOutputRun method) (fastr.execution.inputoutputrun.SubOutputRun method) __setstate__() (fastr.__init__.ConstantNode method) (fastr.__init__.Link method) (fastr.__init__.Network method) (fastr.__init__.Node method) (fastr.__init__.SinkNode method) (fastr.__init__.SourceNode method) (fastr.core.inputoutput.BaseInputOutput method) (fastr.core.inputoutput.Input method) (fastr.core.inputoutput.Output method) (fastr.core.inputoutput.SubInput method) (fastr.core.inputoutput.SubOutput method) (fastr.core.interface.Interface method) (fastr.core.link.Link method) (fastr.core.network.Network method) (fastr.core.node.ConstantNode method) (fastr.core.node.MacroNode method) (fastr.core.node.Node method) (fastr.core.node.SinkNode method) (fastr.core.node.SourceNode method) (fastr.core.samples.SampleValue method) (fastr.core.tool.Tool method) (fastr.core.updateable.Updateable method) (fastr.datatypes.BaseDataType method) (fastr.datatypes.Deferred method) (fastr.execution.inputoutputrun.InputRun method) (fastr.execution.inputoutputrun.OutputRun method) (fastr.execution.inputoutputrun.SubInputRun method) (fastr.execution.inputoutputrun.SubOutputRun method) (fastr.execution.job.Job method) (fastr.execution.linkrun.LinkRun method) (fastr.execution.macronoderun.MacroNodeRun method) (fastr.execution.networkrun.NetworkRun method) (fastr.execution.noderun.NodeRun method) (fastr.execution.sinknoderun.SinkNodeRun method) (fastr.execution.sourcenoderun.ConstantNodeRun method) (fastr.execution.sourcenoderun.SourceNodeRun method) (fastr.plugins.FastrInterface method) (fastr.plugins.FlowInterface method) (fastr.plugins.NipypeInterface method) __slotnames__ (fastr.web.api.ObjectUrl attribute) __slots__ (fastr.core.pluginmanager.plugin_option_type attribute) (fastr.core.target.SystemUsageInfo attribute) __str__() (fastr.__init__.Node method) (fastr.core.baseplugin.BasePlugin method) (fastr.core.inputoutput.Input method) (fastr.core.inputoutput.Output method) (fastr.core.inputoutput.SubInput method) (fastr.core.inputoutput.SubOutput method) (fastr.core.node.Node method) (fastr.core.samples.SampleBaseId method) (fastr.core.samples.SampleIndex method) (fastr.core.tool.Tool method) (fastr.core.version.Version method) (fastr.datatypes.BaseDataType method) (fastr.datatypes.Boolean method) (fastr.exceptions.FastrError method) (fastr.exceptions.FastrExecutableNotFoundError method) (fastr.exceptions.FastrScriptNotFoundError method) (fastr.exceptions.FastrSerializationError method) (fastr.execution.inputoutputrun.InputRun method) (fastr.execution.inputoutputrun.OutputRun method) (fastr.execution.inputoutputrun.SubInputRun method) (fastr.execution.inputoutputrun.SubOutputRun method) (fastr.execution.noderun.NodeRun method) (fastr.utils.schematotable.SchemaPrinter method) __updatefunc__() (fastr.core.inputgroup.InputGroup method) (fastr.core.updateable.Updateable method) __updateinprogress__ (fastr.core.updateable.Updateable attribute) __updatetriggers__ (fastr.core.inputgroup.InputGroup attribute) (fastr.core.updateable.Updateable attribute) __updating__ (fastr.core.updateable.Updateable attribute) __weakref__ (fastr.configmanager.Config attribute) (fastr.configmanager.EmptyDefault attribute) (fastr.core.baseplugin.BasePlugin attribute) (fastr.core.dimension.Dimension attribute) (fastr.core.dimension.HasDimensions attribute) (fastr.core.interface.InterfaceResult attribute) (fastr.core.pluginmanager.LazyModule attribute) (fastr.core.provenance.Provenance attribute) (fastr.core.serializable.PassThroughSerializer attribute) (fastr.core.serializable.Serializable attribute) (fastr.core.updateable.Updateable attribute) (fastr.exceptions.FastrError attribute) (fastr.exceptions.FastrIOError attribute) (fastr.exceptions.FastrOSError attribute) (fastr.execution.environmentmodules.EnvironmentModules attribute) (fastr.execution.networkanalyzer.NetworkAnalyzer attribute) (fastr.execution.networkchunker.NetworkChunker attribute) (fastr.utils.classproperty.ClassPropertyDescriptor attribute) (fastr.utils.pim_publisher.BasePimAPI attribute) (fastr.utils.pim_publisher.PimAPI_v1 attribute) (fastr.utils.pim_publisher.PimAPI_v2 attribute) (fastr.utils.pim_publisher.PimPublisher attribute) (fastr.utils.schematotable.SchemaPrinter attribute) (fastr.web.api.Run attribute) _item_extension() (fastr.core.basemanager.BaseManager method) _load_item() (fastr.core.basemanager.BaseManager method)

A

abort() (fastr.execution.networkrun.NetworkRun method) (fastr.web.api.Run method) abstract (fastr.plugins.VirtualFileSystem attribute) action() (fastr.datatypes.DataType method) (fastr.datatypes.Directory method) activity() (fastr.core.provenance.Provenance method) add_link() (fastr.__init__.Network method) (fastr.Network method) (fastr.core.network.Network method) add_node() (fastr.__init__.Network method) (fastr.Network method) (fastr.core.network.Network method) add_parser_doc_link() (in module fastr.utils.cmd) add_stepid() (fastr.__init__.Network method) (fastr.core.network.Network method) AdvancedFlowNode (class in fastr.core.node) AdvancedFlowNodeRun (class in fastr.execution.flownoderun) AdvancedFlowOutput (class in fastr.core.inputoutput) AdvancedFlowOutputRun (class in fastr.execution.inputoutputrun)

agent() (fastr.core.provenance.Provenance method) aggregate() (fastr.core.target.ProcessUsageCollection method) all (fastr.execution.job.JobCleanupLevel attribute) analyze_network() (fastr.execution.networkanalyzer.DefaultNetworkAnalyzer method) (fastr.execution.networkanalyzer.NetworkAnalyzer method) AnalyzeImageFile (class in fastr.datatypes) any_of_draft4() (in module fastr.utils.jsonschemaparser) AnyFile (class in fastr.datatypes) AnyType (class in fastr.datatypes) append() (fastr.configmanager.EmptyDefault method) (fastr.core.inputoutput.Input method) (fastr.core.target.ProcessUsageCollection method) asdict() (fastr.configmanager.EmptyDefault method) aslist() (fastr.configmanager.EmptyDefault method) authors (fastr.core.tool.Tool attribute) automatic (fastr.core.inputoutput.BaseOutput attribute) (fastr.execution.inputoutputrun.OutputRun attribute) avail() (fastr.execution.environmentmodules.EnvironmentModules method) avail_modules (fastr.execution.environmentmodules.EnvironmentModules attribute)

B

BaseDataType (class in fastr.datatypes) BaseInput (class in fastr.core.inputoutput) BaseInputGroupCombiner (class in fastr.core.inputgroupcombiner) BaseInputOutput (class in fastr.core.inputoutput) BaseInputRun (class in fastr.execution.inputoutputrun) BaseManager (class in fastr.core.basemanager) basename() (in module fastr.data.url) BaseOutput (class in fastr.core.inputoutput) BasePimAPI (class in fastr.utils.pim_publisher) BasePlugin (class in fastr.core.baseplugin)

BasePluginManager (class in fastr.core.pluginmanager) blocking (fastr.__init__.Node attribute) (fastr.core.inputoutput.Output attribute) (fastr.core.node.FlowNode attribute) (fastr.core.node.Node attribute) (fastr.execution.flownoderun.FlowNodeRun attribute) (fastr.execution.inputoutputrun.OutputRun attribute) (fastr.execution.noderun.NodeRun attribute) BlockingExecution (class in fastr.plugins) Boolean (class in fastr.datatypes) build (fastr.core.version.Version attribute)

C

calc_cardinality() (fastr.execution.job.Job static method) calcmro() (fastr.core.updateable.UpdateableMeta class method) call_subprocess() (fastr.core.target.SubprocessBasedTarget method) cancel (fastr.execution.executionpluginmanager.JobAction attribute) cancel_job() (fastr.execution.executionpluginmanager.ExecutionPlugin method) cancelled (fastr.execution.job.JobState attribute) CANCELS_DEPENDENCIES (fastr.execution.executionpluginmanager.ExecutionPlugin attribute) (fastr.plugins.DRMAAExecution attribute) cardinality (fastr.core.samples.SampleItemBase attribute) cardinality() (fastr.__init__.Link method) (fastr.core.inputoutput.BaseInputOutput method) (fastr.core.inputoutput.Input method) (fastr.core.inputoutput.Output method) (fastr.core.inputoutput.SourceOutput method) (fastr.core.inputoutput.SubInput method) (fastr.core.inputoutput.SubOutput method) (fastr.core.link.Link method) (fastr.execution.inputoutputrun.InputRun method) (fastr.execution.inputoutputrun.OutputRun method) (fastr.execution.inputoutputrun.SourceOutputRun method) (fastr.execution.inputoutputrun.SubInputRun method) (fastr.execution.inputoutputrun.SubOutputRun method) (fastr.execution.linkrun.LinkRun method) cardinality_from_nargs() (in module fastr.utils.cmd.extract_argparse) cast() (fastr.core.samples.SampleValue method) cast_to_type() (fastr.execution.job.Job static method) check_cardinality() (fastr.core.inputoutput.BaseInputOutput method) check_finished() (fastr.plugins.RQExecution method) (fastr.plugins.StrongrExecution method) check_id() (fastr.__init__.Network method) (fastr.core.network.Network method) (fastr.execution.networkrun.NetworkRun method) check_input_id() (fastr.plugins.FastrInterface method) check_job_requirements() (fastr.execution.executionpluginmanager.ExecutionPlugin method) check_job_status() (fastr.execution.executionpluginmanager.ExecutionPlugin method) check_network() (in module fastr.utils.cmd.test) check_networks() (in module fastr.utils.cmd.test) check_output_id() (fastr.plugins.FastrInterface method) check_tool() (in module fastr.utils.cmd.test) check_tools() (in module fastr.utils.cmd.test) checksum() (fastr.datatypes.BaseDataType method) (fastr.datatypes.Deferred method) (fastr.datatypes.FilePrefix method) (fastr.datatypes.JsonFile method) (fastr.datatypes.MetaImageFile method) (fastr.datatypes.NiftiImageFileCompressed method) (fastr.datatypes.URLType method) (in module fastr.utils.checksum) checksum_directory() (in module fastr.utils.checksum) chunck_network() (fastr.execution.networkchunker.DefaultNetworkChunker method) (fastr.execution.networkchunker.NetworkChunker method) cite (fastr.core.tool.Tool attribute) classproperty() (in module fastr.utils.classproperty) ClassPropertyDescriptor (class in fastr.utils.classproperty) clean() (fastr.execution.job.Job method) clean_free_jobs() (fastr.execution.executionpluginmanager.ExecutionPlugin method) cleanup() (fastr.core.baseplugin.BasePlugin method) (fastr.core.ioplugin.IOPlugin method) (fastr.core.ioplugin.IOPluginManager method) (fastr.execution.executionpluginmanager.ExecutionPlugin method) (fastr.plugins.BlockingExecution method) (fastr.plugins.DRMAAExecution method) (fastr.plugins.LinearExecution method) (fastr.plugins.ProcessPoolExecution method) (fastr.plugins.RQExecution method) (fastr.plugins.SlurmExecution method) (fastr.plugins.StrongrExecution method) (fastr.plugins.XNATStorage method) clear() (fastr.core.inputgroup.InputGroup method) (fastr.core.inputoutput.Input method) (fastr.execution.environmentmodules.EnvironmentModules method) clear_version() (in module fastr.version) collapse (fastr.__init__.Link attribute) (fastr.core.link.Link attribute) (fastr.execution.linkrun.LinkRun attribute) collapse_indexes (fastr.__init__.Link attribute) (fastr.core.link.Link attribute) (fastr.execution.linkrun.LinkRun attribute) collect_errors() (fastr.plugins.FastrInterface static method) collect_input_argument_provenance() (fastr.core.provenance.Provenance method) collect_jobs() (fastr.plugins.DRMAAExecution method) collect_provenance() (fastr.core.provenance.Provenance method) (fastr.execution.job.InlineJob method) (fastr.execution.job.Job method) (fastr.execution.job.SourceJob method) collect_results() (fastr.plugins.FastrInterface method) collector_plugin_type (fastr.plugins.FastrInterface attribute) collectors (fastr.plugins.FastrInterface attribute) combine() (fastr.core.samples.SampleItemBase static method) combine_dimensions() (fastr.core.dimension.ForwardsDimensions method) command (fastr.core.tool.Tool attribute) COMMAND_DUMP (fastr.execution.job.Job attribute) command_version (fastr.core.tool.Tool attribute) commandfile (fastr.execution.job.Job attribute)

commandurl (fastr.execution.job.Job attribute) CommaSeperatedValueFile (class in fastr.plugins) compare_execution_dir() (in module fastr.utils.compare) compare_job_dirs() (in module fastr.utils.compare) compare_job_output_data() (in module fastr.utils.compare) compare_output_data() (fastr.core.tool.Tool static method) compare_set() (in module fastr.utils.compare) compare_value_dict_item() (in module fastr.utils.compare) compare_value_list() (in module fastr.utils.compare) Config (class in fastr.configmanager) configuration_fields (fastr.core.baseplugin.BasePlugin attribute) (fastr.plugins.DRMAAExecution attribute) (fastr.plugins.ProcessPoolExecution attribute) (fastr.plugins.RQExecution attribute) (fastr.plugins.SlurmExecution attribute) (fastr.plugins.StrongrExecution attribute) connect() (fastr.plugins.XNATStorage method) constantlist (fastr.execution.networkrun.NetworkRun attribute) ConstantNode (class in fastr.__init__) (class in fastr.core.node) ConstantNodeRun (class in fastr.__init__) (class in fastr.execution.sourcenoderun) container (fastr.plugins.DockerTarget attribute) ContainsSamples (class in fastr.core.samples) content() (fastr.datatypes.AnalyzeImageFile class method) (fastr.datatypes.MetaImageFile class method) (fastr.datatypes.URLType class method) copy_file_dir() (fastr.plugins.VirtualFileSystem static method) cpu_percent (fastr.core.target.SystemUsageInfo attribute) create_constant() (fastr.__init__.Network method) (fastr.core.network.Network method) create_enumtype() (fastr.core.datatypemanager.DataTypeManager method) create_ioplugin_tool() (fastr.core.ioplugin.IOPluginManager static method) create_job() (fastr.execution.noderun.NodeRun method) (fastr.execution.sinknoderun.SinkNodeRun method) (fastr.execution.sourcenoderun.SourceNodeRun method) create_link() (fastr.__init__.Network method) (fastr.Network method) (fastr.core.network.Network method) create_link_from() (fastr.core.inputoutput.BaseInput method) create_macro() (fastr.__init__.Network method) (fastr.core.network.Network method) create_macro_network() (in module fastr.examples.macro_node) (in module fastr.examples.macro_node2) create_native_spec() (fastr.plugins.DRMAAExecution method) create_network() (in module fastr.examples.add_ints) (in module fastr.examples.add_ints_s3) (in module fastr.examples.auto_prefix) (in module fastr.examples.chunk_test) (in module fastr.examples.collapse) (in module fastr.examples.collapse_expand) (in module fastr.examples.cross_validation) (in module fastr.examples.elastix_nipype) (in module fastr.examples.expand) (in module fastr.examples.failing_macro) (in module fastr.examples.failing_network) (in module fastr.examples.filecopy) (in module fastr.examples.input_groups) (in module fastr.examples.macro_node) (in module fastr.examples.macro_node2) (in module fastr.examples.shift_links) (in module fastr.examples.source_sink) create_network_parser() (in module fastr.utils.cmd.run) create_node() (fastr.__init__.Network method) (fastr.Network method) (fastr.core.network.Network method) create_output_cardinality() (fastr.core.inputoutput.Output static method) (fastr.execution.inputoutputrun.OutputRun static method) create_payload() (fastr.execution.job.Job method) (fastr.execution.job.SinkJob method) create_reference() (fastr.__init__.Network method) (fastr.core.network.Network method) (fastr.core.tool.Tool method) (in module fastr.examples.__generate_reference__) create_rest_table() (in module fastr.utils.rest_generation) create_sink() (fastr.__init__.Network method) (fastr.Network method) (fastr.core.network.Network method) create_source() (fastr.__init__.Network method) (fastr.Network method) (fastr.core.network.Network method) create_super_macro_node() (in module fastr.examples.macro_node) create_vfs_url() (in module fastr.data.url) create_zip() (in module fastr.utils.cmd.dump) created (fastr.execution.job.JobState attribute) createobj() (fastr.__init__.Link class method) (fastr.__init__.Node class method) (fastr.core.link.Link class method) (fastr.core.node.Node class method) (fastr.core.serializable.Serializable class method) (fastr.execution.linkrun.LinkRun class method) (fastr.execution.noderun.NodeRun class method) CrossValidation (class in fastr.plugins) current_jobs (fastr.plugins.DRMAAExecution attribute)

D

data (fastr.__init__.ConstantNode attribute) (fastr.core.basemanager.BaseManager attribute) (fastr.core.node.ConstantNode attribute) (fastr.core.pluginmanager.PluginSubManager attribute) (fastr.core.samples.SampleItemBase attribute) (fastr.execution.sourcenoderun.ConstantNodeRun attribute) data_uri() (fastr.core.provenance.Provenance static method) DataType (class in fastr.datatypes) datatype (fastr.__init__.SinkNode attribute) (fastr.__init__.SourceNode attribute) (fastr.core.inputoutput.BaseInputOutput attribute) (fastr.core.inputoutput.Input attribute) (fastr.core.inputoutput.Output attribute) (fastr.core.inputoutput.SubOutput attribute) (fastr.core.node.SinkNode attribute) (fastr.core.node.SourceNode attribute) (fastr.execution.inputoutputrun.InputRun attribute) (fastr.execution.inputoutputrun.OutputRun attribute) (fastr.execution.inputoutputrun.SubOutputRun attribute) (fastr.execution.sinknoderun.SinkNodeRun attribute) (fastr.execution.sourcenoderun.SourceNodeRun attribute) datatype_from_type() (in module fastr.utils.cmd.extract_argparse) DataTypeManager (class in fastr.core.datatypemanager) date_version_matcher (fastr.core.version.Version attribute) debug (fastr.configmanager.Config attribute) DEFAULT_FIELDS (fastr.configmanager.Config attribute) DefaultInputGroupCombiner (class in fastr.core.inputgroupcombiner) DefaultNetworkAnalyzer (class in fastr.execution.networkanalyzer) DefaultNetworkChunker (class in fastr.execution.networkchunker) Deferred (class in fastr.datatypes) delete() (fastr.web.api.RunApi method) descend() (fastr.utils.schematotable.SchemaPrinter method) description (fastr.core.inputoutput.BaseInputOutput attribute) (fastr.core.inputoutput.SubInput attribute) (fastr.core.tool.Tool attribute) (fastr.datatypes.AnalyzeImageFile attribute) (fastr.datatypes.AnyFile attribute) (fastr.datatypes.AnyType attribute) (fastr.datatypes.BaseDataType attribute) (fastr.datatypes.Boolean attribute) (fastr.datatypes.Directory attribute) (fastr.datatypes.EnumType attribute) (fastr.datatypes.FilePrefix attribute) (fastr.datatypes.Float attribute) (fastr.datatypes.ITKImageFile attribute) (fastr.datatypes.Int attribute) (fastr.datatypes.JsonFile attribute) (fastr.datatypes.MetaImageFile attribute) (fastr.datatypes.NiftiImageFile attribute) (fastr.datatypes.NiftiImageFileCompressed attribute) (fastr.datatypes.NiftiImageFileUncompressed attribute) (fastr.datatypes.NrrdImageFile attribute) (fastr.datatypes.Number attribute) (fastr.datatypes.ProvNFile attribute) (fastr.datatypes.String attribute) (fastr.datatypes.TifImageFile attribute) (fastr.datatypes.TxtFile attribute) (fastr.datatypes.UnsignedInt attribute) (fastr.execution.inputoutputrun.SubInputRun attribute) destroy() (fastr.__init__.Link method) (fastr.core.link.Link method) (fastr.execution.linkrun.LinkRun method) dicteq() (in module fastr.utils.dicteq) diffdict() (in module fastr.utils.dicteq) diffobj() (in module fastr.utils.dicteq) diffobj_str() (in module fastr.utils.dicteq) Dimension (class in fastr.core.dimension) dimensionality (fastr.core.samples.SampleItemBase attribute)

dimensions (fastr.__init__.Link attribute) (fastr.__init__.Node attribute) (fastr.__init__.SourceNode attribute) (fastr.core.dimension.ForwardsDimensions attribute) (fastr.core.dimension.HasDimensions attribute) (fastr.core.inputgroup.InputGroup attribute) (fastr.core.inputgroupcombiner.BaseInputGroupCombiner attribute) (fastr.core.inputoutput.AdvancedFlowOutput attribute) (fastr.core.inputoutput.Input attribute) (fastr.core.inputoutput.MacroOutput attribute) (fastr.core.inputoutput.Output attribute) (fastr.core.inputoutput.SubInput attribute) (fastr.core.link.Link attribute) (fastr.core.node.FlowNode attribute) (fastr.core.node.Node attribute) (fastr.core.node.SourceNode attribute) (fastr.core.samples.ContainsSamples attribute) (fastr.core.samples.SampleCollection attribute) (fastr.execution.inputoutputrun.InputRun attribute) (fastr.execution.inputoutputrun.MacroOutputRun attribute) (fastr.execution.inputoutputrun.SourceOutputRun attribute) (fastr.execution.inputoutputrun.SubInputRun attribute) (fastr.execution.linkrun.LinkRun attribute) dimnames (fastr.__init__.Node attribute) (fastr.core.dimension.HasDimensions attribute) (fastr.core.node.Node attribute) (fastr.execution.flownoderun.FlowNodeRun attribute) (fastr.execution.noderun.NodeRun attribute) (fastr.execution.sourcenoderun.SourceNodeRun attribute) dir_list() (in module fastr.utils.clear_pycs) Directory (class in fastr.datatypes) directory() (in module fastr.utils.cmd.test) dirname() (in module fastr.data.url) dirurl() (in module fastr.data.url) dispatch_callbacks() (fastr.plugins.DRMAAExecution method) doc() (in module fastr.web.views) DockerTarget (class in fastr.plugins) dot_extension (fastr.datatypes.BaseDataType attribute) draw() (fastr.__init__.ConstantNode method) (fastr.__init__.Link method) (fastr.__init__.Network method) (fastr.__init__.Node method) (fastr.__init__.SinkNode method) (fastr.__init__.SourceNode method) (fastr.core.link.Link method) (fastr.core.network.Network method) (fastr.core.node.ConstantNode method) (fastr.core.node.MacroNode method) (fastr.core.node.Node method) (fastr.core.node.SinkNode method) (fastr.core.node.SourceNode method) draw_id() (fastr.__init__.Node method) (fastr.core.node.Node method) draw_link_target() (fastr.__init__.Node method) (fastr.core.node.MacroNode method) (fastr.core.node.Node method) draw_network() (fastr.__init__.Network method) (fastr.Network method) (fastr.core.network.Network method) DRMAAExecution (class in fastr.plugins) dump() (fastr.core.serializable.Serializable method) (in module fastr.utils.xmltodict) dumpf() (fastr.core.serializable.Serializable method) dumpfuncs (fastr.core.serializable.Serializable attribute) dumps() (fastr.core.serializable.PassThroughSerializer static method) (fastr.core.serializable.Serializable method) (in module fastr.utils.xmltodict) DYNAMIC_LIBRARY_PATH_DICT (fastr.plugins.LocalBinaryTarget attribute)

E

empty (fastr.core.inputgroup.InputGroup attribute) EmptyDefault (class in fastr.configmanager) endpoint (fastr.web.api.NetworkApi attribute) (fastr.web.api.NetworkListApi attribute) (fastr.web.api.RunApi attribute) (fastr.web.api.RunListApi attribute) (fastr.web.api.StatusApi attribute) (fastr.web.api.ToolApi attribute) (fastr.web.api.ToolListApi attribute) ensure_tmp_dir() (fastr.execution.job.Job method) entity() (fastr.core.provenance.Provenance method) EnumType (class in fastr.datatypes) EnvironmentModules (class in fastr.execution.environmentmodules) envmod (fastr.execution.environmentmodules.ModuleSystem attribute) examplesdir (fastr.configmanager.Config attribute) exception (fastr.execution.environmentmodules.EnvironmentModules attribute) excerpt() (fastr.exceptions.FastrError method) exec_worker() (fastr.plugins.LinearExecution method) execute() (fastr.__init__.Network method) (fastr.core.interface.Interface method) (fastr.core.network.Network method) (fastr.core.tool.Tool method) (fastr.execution.flownoderun.AdvancedFlowNodeRun method) (fastr.execution.job.Job method) (fastr.execution.macronoderun.MacroNodeRun method) (fastr.execution.networkrun.NetworkRun method) (fastr.execution.noderun.NodeRun method) (fastr.execution.sinknoderun.SinkNodeRun method) (fastr.execution.sourcenoderun.ConstantNodeRun method) (fastr.execution.sourcenoderun.SourceNodeRun method) (fastr.plugins.CrossValidation static method) (fastr.plugins.FastrInterface method) (fastr.plugins.FlowInterface method) (fastr.plugins.NipypeInterface method) execute_job() (in module fastr.execution.executionscript) execution_done (fastr.execution.job.JobState attribute) execution_failed (fastr.execution.job.JobState attribute)

execution_plugin (fastr.configmanager.Config attribute) ExecutionPlugin (class in fastr.execution.executionpluginmanager) ExecutionPluginManager (class in fastr.execution.executionpluginmanager) executionscript (fastr.configmanager.Config attribute) expand (fastr.__init__.Link attribute) (fastr.core.link.Link attribute) (fastr.execution.linkrun.LinkRun attribute) expand() (fastr.core.samples.SampleIndex method) expand_url() (fastr.core.ioplugin.IOPlugin method) (fastr.core.ioplugin.IOPluginManager method) (fastr.plugins.CommaSeperatedValueFile method) (fastr.plugins.VirtualFileSystem method) (fastr.plugins.VirtualFileSystemRegularExpression method) (fastr.plugins.VirtualFileSystemValueList method) (fastr.plugins.XNATStorage method) expanding (fastr.core.interface.Interface attribute) (fastr.plugins.FastrInterface attribute) (fastr.plugins.FlowInterface attribute) (fastr.plugins.NipypeInterface attribute) extend() (fastr.configmanager.EmptyDefault method) (in module fastr.utils.jsonschemaparser) extension (fastr.datatypes.AnalyzeImageFile attribute) (fastr.datatypes.BaseDataType attribute) (fastr.datatypes.Directory attribute) (fastr.datatypes.FilePrefix attribute) (fastr.datatypes.JsonFile attribute) (fastr.datatypes.MetaImageFile attribute) (fastr.datatypes.NiftiImageFileCompressed attribute) (fastr.datatypes.NiftiImageFileUncompressed attribute) (fastr.datatypes.NrrdImageFile attribute) (fastr.datatypes.ProvNFile attribute) (fastr.datatypes.TifImageFile attribute) (fastr.datatypes.TxtFile attribute) extra (fastr.core.version.Version attribute) extra_string (fastr.core.version.Version attribute) extract_argparser() (in module fastr.utils.cmd.extract_argparse) extrainfofile (fastr.execution.job.Job attribute) extrainfourl (fastr.execution.job.Job attribute)

F

failed (fastr.core.baseplugin.PluginState attribute) (fastr.execution.job.JobState attribute) failed_annotations (fastr.core.samples.SampleItemBase attribute) fastr.__init__ (module) fastr.configmanager (module) fastr.core (module) fastr.core.basemanager (module) fastr.core.baseplugin (module) fastr.core.datatypemanager (module) fastr.core.dimension (module) fastr.core.inputgroup (module) fastr.core.inputgroupcombiner (module) fastr.core.inputoutput (module) fastr.core.interface (module) fastr.core.ioplugin (module) fastr.core.link (module) fastr.core.network (module) fastr.core.networkmanager (module) fastr.core.node (module) fastr.core.objectmanager (module) fastr.core.pluginmanager (module) fastr.core.provenance (module) fastr.core.samples (module) fastr.core.serializable (module) fastr.core.target (module) fastr.core.test (module) fastr.core.tool (module) fastr.core.toolmanager (module) fastr.core.updateable (module) fastr.core.version (module) fastr.core.vfs (module) fastr.data (module) fastr.data.url (module) fastr.datatypes (module) fastr.examples (module) fastr.examples.__generate_reference__ (module) fastr.examples.add_ints (module) fastr.examples.add_ints_s3 (module) fastr.examples.auto_prefix (module) fastr.examples.chunk_test (module) fastr.examples.collapse (module) fastr.examples.collapse_expand (module) fastr.examples.cross_validation (module) fastr.examples.elastix_nipype (module) fastr.examples.expand (module) fastr.examples.failing_macro (module) fastr.examples.failing_network (module) fastr.examples.filecopy (module) fastr.examples.input_groups (module) fastr.examples.macro_node (module) fastr.examples.macro_node2 (module) fastr.examples.shift_links (module) fastr.examples.source_sink (module) fastr.exceptions (module) fastr.execution (module) fastr.execution.environmentmodules (module) fastr.execution.executionpluginmanager (module) fastr.execution.executionscript (module) fastr.execution.flownoderun (module) fastr.execution.inputoutputrun (module) fastr.execution.job (module) fastr.execution.linkrun (module) fastr.execution.macronoderun (module) fastr.execution.networkanalyzer (module) fastr.execution.networkchunker (module) fastr.execution.networkrun (module) fastr.execution.noderun (module) fastr.execution.sinknoderun (module) fastr.execution.sourcenoderun (module) fastr.plugins (module) fastr.resources (module) fastr.utils (module) fastr.utils.checksum (module) fastr.utils.classproperty (module) fastr.utils.clear_pycs (module) fastr.utils.cmd (module) fastr.utils.cmd.cat (module) fastr.utils.cmd.dump (module) fastr.utils.cmd.execute (module) fastr.utils.cmd.extract_argparse (module) fastr.utils.cmd.prov (module) fastr.utils.cmd.run (module) fastr.utils.cmd.test (module) fastr.utils.cmd.trace (module) fastr.utils.cmd.verify (module) fastr.utils.cmd.webapp (module) fastr.utils.compare (module) fastr.utils.dicteq (module) fastr.utils.filesynchelper (module) fastr.utils.gettools (module) fastr.utils.iohelpers (module) fastr.utils.jsonschemaparser (module) fastr.utils.multiprocesswrapper (module) fastr.utils.pim_publisher (module) fastr.utils.procutils (module) fastr.utils.rest_generation (module) fastr.utils.schematotable (module) fastr.utils.sysinfo (module) fastr.utils.verify (module) fastr.utils.xmltodict (module) fastr.version (module) fastr.web (module) fastr.web.api (module) fastr.web.run (module) fastr.web.views (module) fastr_cat() (in module fastr.utils.cmd.cat) fastr_isinstance() (in module fastr.datatypes) FastrAttributeError FastrCannotChangeAttributeError FastrCardinalityError FastrCollectorError FastrDataTypeFileNotReadable FastrDataTypeMismatchError FastrDataTypeNotAvailableError FastrDataTypeNotInstantiableError FastrDataTypeValueError FastrError FastrErrorInSubprocess FastrExecutableNotFoundError FastrExecutionError FastrImportError FastrIndexError FastrIndexNonexistent FastrInterface (class in fastr.plugins) FastrIOError FastrKeyError FastrLookupError FastrMountUnknownError FastrNetworkMismatchError FastrNetworkUnknownError FastrNodeAreadyPreparedError FastrNodeNotPreparedError FastrNodeNotValidError FastrNotExecutableError

FastrNotImplementedError FastrNoValidTargetError FastrObjectUnknownError FastrOptionalModuleNotAvailableError FastrOSError FastrOutputValidationError FastrParentMismatchError FastrPluginCapabilityNotImplemented FastrPluginNotAvailable FastrPluginNotLoaded FastrRefResolver (class in fastr.utils.jsonschemaparser) FastrResultFileNotFound FastrScriptNotFoundError FastrSerializationError FastrSerializationIgnoreDefaultError FastrSerializationInvalidDataError FastrSerializationMethodError FastrSinkDataUnavailableError FastrSizeInvalidError FastrSizeMismatchError FastrSizeUnknownError FastrSourceDataUnavailableError FastrStateError FastrSubprocessNotFinished FastrToolNotAvailableError FastrToolTargetNotFound FastrToolUnknownError FastrTypeError FastrUnknownURLSchemeError FastrValueError FastrVersionInvalidError FastrVersionMismatchError fetch_url() (fastr.core.ioplugin.IOPlugin method) (fastr.plugins.FileSystem method) (fastr.plugins.VirtualFileSystem method) (fastr.plugins.XNATStorage method) fetch_value() (fastr.core.ioplugin.IOPlugin method) (fastr.plugins.FileSystem method) (fastr.plugins.VirtualFileSystem method) filename (fastr.core.pluginmanager.plugin_option_type attribute) (fastr.datatypes.AnalyzeImageFile attribute) (fastr.datatypes.BaseDataType attribute) (fastr.datatypes.Boolean attribute) (fastr.datatypes.Directory attribute) (fastr.datatypes.FilePrefix attribute) (fastr.datatypes.Float attribute) (fastr.datatypes.ITKImageFile attribute) (fastr.datatypes.Int attribute) (fastr.datatypes.JsonFile attribute) (fastr.datatypes.MetaImageFile attribute) (fastr.datatypes.NiftiImageFile attribute) (fastr.datatypes.NiftiImageFileCompressed attribute) (fastr.datatypes.NiftiImageFileUncompressed attribute) (fastr.datatypes.NrrdImageFile attribute) (fastr.datatypes.Number attribute) (fastr.datatypes.ProvNFile attribute) (fastr.datatypes.String attribute) (fastr.datatypes.TifImageFile attribute) (fastr.datatypes.TxtFile attribute) (fastr.datatypes.UnsignedInt attribute) (fastr.plugins.BlockingExecution attribute) (fastr.plugins.CommaSeperatedValueFile attribute) (fastr.plugins.CrossValidation attribute) (fastr.plugins.DRMAAExecution attribute) (fastr.plugins.DockerTarget attribute) (fastr.plugins.FastrInterface attribute) (fastr.plugins.FileSystem attribute) (fastr.plugins.FlowInterface attribute) (fastr.plugins.LinearExecution attribute) (fastr.plugins.LocalBinaryTarget attribute) (fastr.plugins.NipypeInterface attribute) (fastr.plugins.Null attribute) (fastr.plugins.ProcessPoolExecution attribute) (fastr.plugins.RQExecution attribute) (fastr.plugins.Reference attribute) (fastr.plugins.SingularityTarget attribute) (fastr.plugins.SlurmExecution attribute) (fastr.plugins.StrongrExecution attribute) (fastr.plugins.VirtualFileSystemRegularExpression attribute) (fastr.plugins.VirtualFileSystemValueList attribute) (fastr.plugins.XNATStorage attribute) FilePrefix (class in fastr.datatypes) FileSyncHelper (class in fastr.utils.filesynchelper) filesynchelper_enabled() (in module fastr.utils.filesynchelper) filesynchelper_url (fastr.configmanager.Config attribute) FileSystem (class in fastr.plugins) fill_output_argument() (fastr.execution.job.Job class method) filter_plugin() (fastr.core.pluginmanager.PluginsView method) find_argparser() (in module fastr.utils.cmd.extract_argparse) find_commands() (in module fastr.utils.cmd) find_member() (fastr.core.updateable.UpdateableMeta class method) find_source_index() (fastr.__init__.Node method) (fastr.core.inputgroup.InputGroup method) (fastr.core.node.Node method) (fastr.execution.noderun.NodeRun method) finished (fastr.execution.job.JobState attribute) Float (class in fastr.datatypes) flow_plugin_type (fastr.plugins.FlowInterface attribute) flow_plugins (fastr.plugins.FlowInterface attribute) FlowInterface (class in fastr.plugins) FlowNode (class in fastr.core.node) FlowNodeRun (class in fastr.execution.flownoderun) format() (fastr.web.api.ObjectUrl method) (fastr.web.api.SubUrl method) ForwardsDimensions (class in fastr.core.dimension) from_schema() (fastr.utils.jsonschemaparser.FastrRefResolver class method) full_split() (in module fastr.data.url) fullid (fastr.__init__.Link attribute) (fastr.__init__.Network attribute) (fastr.__init__.Node attribute) (fastr.core.baseplugin.BasePlugin attribute) (fastr.core.datatypemanager.DataTypeManager attribute) (fastr.core.inputgroup.InputGroup attribute) (fastr.core.inputgroupcombiner.BaseInputGroupCombiner attribute) (fastr.core.inputoutput.BaseInputOutput attribute) (fastr.core.inputoutput.Input attribute) (fastr.core.inputoutput.Output attribute) (fastr.core.inputoutput.SubInput attribute) (fastr.core.inputoutput.SubOutput attribute) (fastr.core.link.Link attribute) (fastr.core.network.Network attribute) (fastr.core.node.Node attribute) (fastr.core.samples.SampleCollection attribute) (fastr.core.tool.Tool attribute) (fastr.datatypes.BaseDataType attribute) (fastr.execution.inputoutputrun.InputRun attribute) (fastr.execution.inputoutputrun.OutputRun attribute) (fastr.execution.inputoutputrun.SubInputRun attribute) (fastr.execution.inputoutputrun.SubOutputRun attribute) (fastr.execution.job.Job attribute) (fastr.execution.linkrun.LinkRun attribute) (fastr.execution.networkrun.NetworkRun attribute) (fastr.execution.noderun.NodeRun attribute) function_wrapper() (in module fastr.utils.multiprocesswrapper)

G

GE_NATIVE_SPEC (fastr.plugins.DRMAAExecution attribute) generate_all_references() (in module fastr.examples.__generate_reference__) generate_jobs() (fastr.execution.networkrun.NetworkRun method) get() (fastr.web.api.NetworkApi method) (fastr.web.api.NetworkListApi method) (fastr.web.api.RunApi method) (fastr.web.api.RunListApi method) (fastr.web.api.StatusApi method) (fastr.web.api.ToolApi method) (fastr.web.api.ToolListApi method) get_arguments() (fastr.plugins.FastrInterface method) get_base_version() (in module fastr.version) get_command() (fastr.plugins.FastrInterface method) get_command_module() (in module fastr.utils.cmd) get_cpu_usage() (in module fastr.utils.sysinfo) get_deferred() (fastr.execution.job.Job method) get_drmaa_info() (in module fastr.utils.sysinfo) get_field() (fastr.configmanager.Config method) get_hg_info() (in module fastr.version) get_hostinfo() (in module fastr.utils.sysinfo) get_job() (fastr.execution.executionpluginmanager.ExecutionPlugin method) get_memory_usage() (in module fastr.utils.sysinfo) get_mounts() (in module fastr.utils.sysinfo) get_object_version() (fastr.core.networkmanager.NetworkManager method) (fastr.core.objectmanager.ObjectManager method) (fastr.core.toolmanager.ToolManager method) get_os() (in module fastr.utils.sysinfo) get_output_datatype() (fastr.execution.job.Job method) (fastr.execution.job.SourceJob method) get_output_info() (fastr.core.node.MacroNode method) (fastr.execution.macronoderun.MacroNodeRun method) get_parent_provenance() (fastr.core.provenance.Provenance static method) get_parser() (in module fastr.utils.cmd.cat) (in module fastr.utils.cmd.dump) (in module fastr.utils.cmd.execute) (in module fastr.utils.cmd.extract_argparse) (in module fastr.utils.cmd.prov) (in module fastr.utils.cmd.run) (in module fastr.utils.cmd.test) (in module fastr.utils.cmd.trace) (in module fastr.utils.cmd.verify) (in module fastr.utils.cmd.webapp)

get_path_from_url() (in module fastr.data.url) get_processes() (in module fastr.utils.sysinfo) get_prov_document() (in module fastr.utils.cmd.prov) get_python() (in module fastr.utils.sysinfo) get_result() (fastr.execution.job.InlineJob method) (fastr.execution.job.Job method) (fastr.execution.job.SinkJob method) get_saved_version() (in module fastr.version) get_serializer() (fastr.core.serializable.Serializable class method) get_sourced_nodes() (fastr.__init__.Node method) (fastr.core.inputoutput.Input method) (fastr.core.inputoutput.SubInput method) (fastr.core.node.Node method) (fastr.execution.inputoutputrun.InputRun method) (fastr.execution.inputoutputrun.SubInputRun method) (fastr.execution.noderun.NodeRun method) get_sourced_outputs() (fastr.core.inputoutput.Input method) (fastr.core.inputoutput.SubInput method) (fastr.execution.inputoutputrun.InputRun method) (fastr.execution.inputoutputrun.SubInputRun method) get_specials() (fastr.plugins.FastrInterface method) get_status() (fastr.execution.executionpluginmanager.ExecutionPlugin method) get_sysinfo() (in module fastr.utils.sysinfo) get_type() (fastr.core.datatypemanager.DataTypeManager method) (fastr.plugins.NipypeInterface method) get_url_scheme() (in module fastr.data.url) get_users() (in module fastr.utils.sysinfo) get_value() (fastr.execution.job.Job class method) getblueprinter() (in module fastr.utils.jsonschemaparser) global_id (fastr.__init__.Network attribute) (fastr.__init__.Node attribute) (fastr.core.network.Network attribute) (fastr.core.node.Node attribute) (fastr.execution.networkrun.NetworkRun attribute) (fastr.execution.noderun.NodeRun attribute) guess_type() (fastr.core.datatypemanager.DataTypeManager method)

H

has_file_promise() (fastr.utils.filesynchelper.FileSyncHelper method) has_type() (fastr.core.datatypemanager.DataTypeManager method) HasDimensions (class in fastr.core.dimension) hash (fastr.core.tool.Tool attribute) hash_inputs() (fastr.execution.job.Job method) (fastr.execution.job.SinkJob method) (fastr.execution.job.SourceJob method)

hash_results() (fastr.execution.job.Job method) hashsum() (in module fastr.utils.checksum) HasSamples (class in fastr.core.samples) help (fastr.core.tool.Tool attribute) hold (fastr.execution.executionpluginmanager.JobAction attribute) (fastr.execution.job.JobState attribute) hold_job() (fastr.execution.executionpluginmanager.ExecutionPlugin method)

I

id (fastr.__init__.Network attribute) (fastr.__init__.Node attribute) (fastr.core.baseplugin.BasePlugin attribute) (fastr.core.inputoutput.BaseInputOutput attribute) (fastr.core.network.Network attribute) (fastr.core.node.Node attribute) (fastr.core.pluginmanager.plugin_option_type attribute) (fastr.core.samples.SampleItemBase attribute) (fastr.datatypes.BaseDataType attribute) (fastr.execution.job.Job attribute) (fastr.execution.job.SinkJob attribute) (fastr.execution.networkrun.NetworkRun attribute) (fastr.execution.noderun.NodeRun attribute) ids() (fastr.core.samples.HasSamples method) index (fastr.core.samples.SampleItemBase attribute) index() (fastr.core.inputoutput.Input method) (fastr.execution.inputoutputrun.InputRun method) (in module fastr.web.views) indexes() (fastr.core.samples.HasSamples method) indexrep (fastr.core.inputoutput.SubOutput attribute) (fastr.execution.inputoutputrun.SubOutputRun attribute) INFO_DUMP (fastr.execution.job.Job attribute) init_provenance() (fastr.core.provenance.Provenance method) InlineJob (class in fastr.execution.job) Input (class in fastr.core.inputoutput) input (fastr.__init__.SinkNode attribute) (fastr.core.node.SinkNode attribute) (fastr.execution.sinknoderun.SinkNodeRun attribute) input_group (fastr.core.inputoutput.Input attribute) (fastr.core.inputoutput.SubInput attribute) (fastr.execution.inputoutputrun.InputRun attribute) (fastr.execution.inputoutputrun.SubInputRun attribute) input_groups (fastr.__init__.Node attribute) (fastr.core.inputgroupcombiner.BaseInputGroupCombiner attribute) (fastr.core.node.Node attribute) (fastr.execution.noderun.NodeRun attribute) InputDict (class in fastr.core.node) InputGroup (class in fastr.core.inputgroup) InputRun (class in fastr.execution.inputoutputrun) inputs (fastr.__init__.Node attribute) (fastr.core.interface.Interface attribute) (fastr.core.node.Node attribute) (fastr.core.tool.Tool attribute) (fastr.plugins.FastrInterface attribute) (fastr.plugins.FlowInterface attribute) (fastr.plugins.NipypeInterface attribute)

InputSpec (class in fastr.core.interface) InputSpecBase (in module fastr.core.interface) insert() (fastr.core.inputoutput.Input method) (fastr.execution.inputoutputrun.InputRun method) instantiate (fastr.core.baseplugin.BasePlugin attribute) Int (class in fastr.datatypes) Interface (class in fastr.core.interface) InterfacePluginManager (class in fastr.core.interface) InterfaceResult (class in fastr.core.interface) IOPlugin (class in fastr.core.ioplugin) IOPluginManager (class in fastr.core.ioplugin) is_mapping (fastr.core.samples.SampleValue attribute) is_sequence (fastr.core.samples.SampleValue attribute) is_valid() (fastr.__init__.Network method) (fastr.core.network.Network method) isdatatype() (fastr.core.datatypemanager.DataTypeManager static method) isinstance() (fastr.datatypes.BaseDataType class method) (fastr.datatypes.TypeGroup class method) isloaded() (fastr.execution.environmentmodules.EnvironmentModules method) isslice (fastr.core.samples.SampleIndex attribute) isurl() (fastr.core.ioplugin.IOPlugin static method) (in module fastr.data.url) items() (fastr.core.samples.HasSamples method) items_prevalidate() (in module fastr.utils.jsonschemaparser) iter_input_groups() (fastr.core.inputgroupcombiner.BaseInputGroupCombiner method) (fastr.core.inputgroupcombiner.DefaultInputGroupCombiner method) (fastr.core.inputgroupcombiner.MergingInputGroupCombiner method) iterconvergingindices() (fastr.execution.inputoutputrun.OutputRun method) iterelements() (fastr.core.samples.SampleValue method) iterinputvalues (fastr.core.inputgroup.InputGroup attribute) iteritems() (fastr.core.inputoutput.SubInput method) (fastr.core.samples.HasSamples method) (fastr.execution.inputoutputrun.SubInputRun method) itersubinputs() (fastr.core.inputoutput.BaseInput method) (fastr.core.inputoutput.Input method) (fastr.core.inputoutput.SubInput method) (fastr.execution.inputoutputrun.BaseInputRun method) (fastr.execution.inputoutputrun.InputRun method) (fastr.execution.inputoutputrun.SubInputRun method) ITKImageFile (class in fastr.datatypes)

J

Job (class in fastr.execution.job) job (fastr.datatypes.Deferred attribute) job_cleanup_level (fastr.configmanager.Config attribute) job_finished() (fastr.execution.executionpluginmanager.ExecutionPlugin method) (fastr.execution.networkrun.NetworkRun method) (fastr.utils.filesynchelper.FileSyncHelper method) job_finished_callback (fastr.execution.networkrun.NetworkRun attribute) job_finished_callback() (fastr.plugins.ProcessPoolExecution method) job_regression_check() (fastr.plugins.DRMAAExecution method)

job_status_callback (fastr.execution.networkrun.NetworkRun attribute) job_status_check() (fastr.plugins.SlurmExecution method) JobAction (class in fastr.execution.executionpluginmanager) JobCleanupLevel (class in fastr.execution.job) jobs (fastr.core.samples.SampleItemBase attribute) JobState (class in fastr.execution.job) join() (in module fastr.data.url) json (in module fastr.plugins) JsonFile (class in fastr.datatypes)

L

LazyModule (class in fastr.core.pluginmanager) LinearExecution (class in fastr.plugins) linearized (fastr.core.inputoutput.SourceOutput attribute) (fastr.execution.inputoutputrun.SourceOutputRun attribute) Link (class in fastr) (class in fastr.__init__), [1] (class in fastr.core.link) LinkRun (class in fastr.execution.linkrun) listeners (fastr.__init__.Node attribute) (fastr.core.inputoutput.Output attribute) (fastr.core.inputoutput.SubOutput attribute) (fastr.core.node.Node attribute) (fastr.execution.inputoutputrun.OutputRun attribute) (fastr.execution.inputoutputrun.SubOutputRun attribute) (fastr.execution.noderun.NodeRun attribute) lmod (fastr.execution.environmentmodules.ModuleSystem attribute) load() (fastr.core.serializable.Serializable class method) (fastr.execution.environmentmodules.EnvironmentModules method) (fastr.utils.filesynchelper.FileSyncHelper method) (in module fastr.utils.xmltodict)

load_gpickle() (in module fastr.utils.iohelpers) load_json() (in module fastr.utils.iohelpers) load_plugin() (fastr.core.pluginmanager.BasePluginManager method) loaded (fastr.core.baseplugin.PluginState attribute) loaded_modules (fastr.execution.environmentmodules.EnvironmentModules attribute) loadf() (fastr.core.serializable.Serializable class method) loads() (fastr.core.serializable.PassThroughSerializer static method) (fastr.core.serializable.Serializable class method) (in module fastr.utils.xmltodict) LocalBinaryTarget (class in fastr.plugins) logdir (fastr.configmanager.Config attribute) logfile (fastr.execution.job.Job attribute) logging_config (fastr.configmanager.Config attribute) loglevel (fastr.configmanager.Config attribute) logtype (fastr.configmanager.Config attribute) logurl (fastr.execution.job.Job attribute) long_id (fastr.execution.networkrun.NetworkRun attribute) lookup() (fastr.datatypes.Deferred class method)

M

MacroNode (class in fastr.core.node) MacroNodeRun (class in fastr.execution.macronoderun) MacroOutput (class in fastr.core.inputoutput) MacroOutputRun (class in fastr.execution.inputoutputrun) main() (in module fastr.core.ioplugin) (in module fastr.examples.add_ints) (in module fastr.examples.add_ints_s3) (in module fastr.examples.auto_prefix) (in module fastr.examples.chunk_test) (in module fastr.examples.collapse) (in module fastr.examples.collapse_expand) (in module fastr.examples.cross_validation) (in module fastr.examples.elastix_nipype) (in module fastr.examples.expand) (in module fastr.examples.failing_macro) (in module fastr.examples.failing_network) (in module fastr.examples.filecopy) (in module fastr.examples.input_groups) (in module fastr.examples.macro_node) (in module fastr.examples.macro_node2) (in module fastr.examples.shift_links) (in module fastr.examples.source_sink) (in module fastr.execution.executionscript) (in module fastr.utils.clear_pycs) (in module fastr.utils.cmd) (in module fastr.utils.cmd.cat) (in module fastr.utils.cmd.dump) (in module fastr.utils.cmd.execute) (in module fastr.utils.cmd.extract_argparse) (in module fastr.utils.cmd.prov) (in module fastr.utils.cmd.run) (in module fastr.utils.cmd.test) (in module fastr.utils.cmd.trace) (in module fastr.utils.cmd.verify) (in module fastr.utils.cmd.webapp) (in module fastr.utils.gettools) (in module fastr.web.run) major (fastr.core.version.Version attribute) make_file_promise() (fastr.utils.filesynchelper.FileSyncHelper method) mapping_part() (fastr.core.samples.SampleValue method) match_filename() (fastr.core.basemanager.BaseManager method) match_types() (fastr.core.datatypemanager.DataTypeManager method) match_types_any() (fastr.core.datatypemanager.DataTypeManager method) md5_checksum() (in module fastr.utils.checksum) mediatypes() (fastr.web.api.NetworkApi method) (fastr.web.api.NetworkListApi method) (fastr.web.api.RunApi method) (fastr.web.api.RunListApi method) (fastr.web.api.StatusApi method) (fastr.web.api.ToolApi method) (fastr.web.api.ToolListApi method) members (fastr.datatypes.TypeGroup attribute) merge() (fastr.core.inputgroupcombiner.BaseInputGroupCombiner method) (fastr.core.inputgroupcombiner.DefaultInputGroupCombiner method) (fastr.core.inputgroupcombiner.MergingInputGroupCombiner method) merge_dimensions (fastr.__init__.Node attribute) (fastr.core.node.Node attribute) (fastr.execution.noderun.NodeRun attribute) merge_failed_annotations() (fastr.core.inputgroupcombiner.BaseInputGroupCombiner method) merge_payloads() (fastr.core.inputgroupcombiner.BaseInputGroupCombiner method)

merge_sample_data() (fastr.core.inputgroupcombiner.BaseInputGroupCombiner method) merge_sample_id() (fastr.core.inputgroupcombiner.BaseInputGroupCombiner method) merge_sample_index() (fastr.core.inputgroupcombiner.BaseInputGroupCombiner method) merge_sample_jobs() (fastr.core.inputgroupcombiner.BaseInputGroupCombiner method) MergingInputGroupCombiner (class in fastr.core.inputgroupcombiner) messages (fastr.core.updateable.Updateable attribute) MetaImageFile (class in fastr.datatypes) methods (fastr.web.api.NetworkApi attribute) (fastr.web.api.NetworkListApi attribute) (fastr.web.api.RunApi attribute) (fastr.web.api.RunListApi attribute) (fastr.web.api.StatusApi attribute) (fastr.web.api.ToolApi attribute) (fastr.web.api.ToolListApi attribute) minor (fastr.core.version.Version attribute) module (fastr.core.baseplugin.BasePlugin attribute) (fastr.datatypes.AnalyzeImageFile attribute) (fastr.datatypes.Boolean attribute) (fastr.datatypes.Directory attribute) (fastr.datatypes.FilePrefix attribute) (fastr.datatypes.Float attribute) (fastr.datatypes.ITKImageFile attribute) (fastr.datatypes.Int attribute) (fastr.datatypes.JsonFile attribute) (fastr.datatypes.MetaImageFile attribute) (fastr.datatypes.NiftiImageFile attribute) (fastr.datatypes.NiftiImageFileCompressed attribute) (fastr.datatypes.NiftiImageFileUncompressed attribute) (fastr.datatypes.NrrdImageFile attribute) (fastr.datatypes.Number attribute) (fastr.datatypes.ProvNFile attribute) (fastr.datatypes.String attribute) (fastr.datatypes.TifImageFile attribute) (fastr.datatypes.TxtFile attribute) (fastr.datatypes.UnsignedInt attribute) (fastr.plugins.BlockingExecution attribute) (fastr.plugins.CommaSeperatedValueFile attribute) (fastr.plugins.CrossValidation attribute) (fastr.plugins.DRMAAExecution attribute) (fastr.plugins.DockerTarget attribute) (fastr.plugins.FastrInterface attribute) (fastr.plugins.FileSystem attribute) (fastr.plugins.FlowInterface attribute) (fastr.plugins.LinearExecution attribute) (fastr.plugins.LocalBinaryTarget attribute) (fastr.plugins.NipypeInterface attribute) (fastr.plugins.Null attribute) (fastr.plugins.ProcessPoolExecution attribute) (fastr.plugins.RQExecution attribute) (fastr.plugins.Reference attribute) (fastr.plugins.SingularityTarget attribute) (fastr.plugins.SlurmExecution attribute) (fastr.plugins.StrongrExecution attribute) (fastr.plugins.VirtualFileSystemRegularExpression attribute) (fastr.plugins.VirtualFileSystemValueList attribute) (fastr.plugins.XNATStorage attribute) ModuleSystem (class in fastr.execution.environmentmodules) monitor_docker() (fastr.plugins.DockerTarget method) monitor_process() (fastr.core.target.SubprocessBasedTarget method) mounts (fastr.configmanager.Config attribute)

N

name (fastr.__init__.Node attribute) (fastr.core.dimension.Dimension attribute) (fastr.core.node.Node attribute) (fastr.core.pluginmanager.plugin_option_type attribute) (fastr.core.tool.Tool attribute) (fastr.datatypes.BaseDataType attribute) (fastr.execution.noderun.NodeRun attribute) namedtuple_to_dict() (in module fastr.utils.sysinfo) namespace (fastr.__init__.Network attribute) (fastr.core.network.Network attribute) (fastr.core.pluginmanager.plugin_option_type attribute) (fastr.core.tool.Tool attribute) NATIVE_SPEC (fastr.plugins.DRMAAExecution attribute) ndims (fastr.core.dimension.HasDimensions attribute) (fastr.core.samples.SampleCollection attribute) (fastr.execution.inputoutputrun.SourceOutputRun attribute) Network (class in fastr) (class in fastr.__init__), [1] (class in fastr.core.network) network (fastr.core.node.MacroNode attribute) (fastr.execution.networkrun.NetworkRun attribute) network() (in module fastr.web.views) NETWORK_DUMP_FILE_NAME (fastr.__init__.Network attribute) (fastr.core.network.Network attribute) (fastr.execution.networkrun.NetworkRun attribute) network_lock_thread() (in module fastr.web.api) network_run (fastr.execution.macronoderun.MacroNodeRun attribute) network_runner() (in module fastr.web.api) NetworkAnalyzer (class in fastr.execution.networkanalyzer) NetworkApi (class in fastr.web.api) NetworkChunker (class in fastr.execution.networkchunker) networklist (in module fastr.core.networkmanager) NetworkListApi (class in fastr.web.api) NetworkManager (class in fastr.core.networkmanager)

NetworkRun (class in fastr.execution.networkrun) networks() (in module fastr.web.views) networks_path (fastr.configmanager.Config attribute) NiftiImageFile (class in fastr.datatypes) NiftiImageFileCompressed (class in fastr.datatypes) NiftiImageFileUncompressed (class in fastr.datatypes) NipypeInterface (class in fastr.plugins) no_cleanup (fastr.execution.job.JobCleanupLevel attribute) Node (class in fastr.__init__) (class in fastr.core.node) node (fastr.core.inputoutput.BaseInputOutput attribute) (fastr.core.inputoutput.SubInput attribute) (fastr.core.inputoutput.SubOutput attribute) (fastr.execution.inputoutputrun.SubInputRun attribute) (fastr.execution.inputoutputrun.SubOutputRun attribute) node_class (fastr.core.tool.Tool attribute) NODE_CLASSES (fastr.utils.pim_publisher.PimAPI_v2 attribute) nodegroup (fastr.__init__.Node attribute) (fastr.__init__.SourceNode attribute) (fastr.core.node.Node attribute) (fastr.core.node.SourceNode attribute) nodegroups (fastr.__init__.Network attribute) (fastr.core.network.Network attribute) (fastr.execution.networkrun.NetworkRun attribute) NodeRun (class in fastr.__init__) (class in fastr.execution.noderun) non_failed (fastr.execution.job.JobCleanupLevel attribute) nonexistent (fastr.execution.job.JobState attribute) normurl() (in module fastr.data.url) not_draft4() (in module fastr.utils.jsonschemaparser) NrrdImageFile (class in fastr.datatypes) ns_id (fastr.core.tool.Tool attribute) Null (class in fastr.plugins) Number (class in fastr.datatypes)

O

object_class (fastr.core.networkmanager.NetworkManager attribute) (fastr.core.objectmanager.ObjectManager attribute) (fastr.core.toolmanager.ToolManager attribute) ObjectManager (class in fastr.core.objectmanager) ObjectUrl (class in fastr.web.api) objectversions() (fastr.core.objectmanager.ObjectManager method) one_of_draft4() (in module fastr.utils.jsonschemaparser) open_url() (in module fastr.utils.cmd.webapp) options (fastr.datatypes.EnumType attribute) Output (class in fastr.core.inputoutput) output (fastr.__init__.SourceNode attribute) (fastr.core.node.SourceNode attribute) (fastr.execution.sourcenoderun.SourceNodeRun attribute) OutputDict (class in fastr.core.node) OutputRun (class in fastr.execution.inputoutputrun)

outputs (fastr.__init__.Node attribute) (fastr.core.interface.Interface attribute) (fastr.core.node.Node attribute) (fastr.core.tool.Tool attribute) (fastr.plugins.FastrInterface attribute) (fastr.plugins.FlowInterface attribute) (fastr.plugins.NipypeInterface attribute) outputsize (fastr.__init__.Node attribute) (fastr.core.node.FlowNode attribute) (fastr.core.node.Node attribute) (fastr.execution.flownoderun.FlowNodeRun attribute) (fastr.execution.noderun.NodeRun attribute) (fastr.execution.sourcenoderun.SourceNodeRun attribute) OutputSpec (class in fastr.core.interface) OutputSpecBase (in module fastr.core.interface)

P

parent (fastr.__init__.Link attribute) (fastr.__init__.Node attribute) (fastr.core.inputgroup.InputGroup attribute) (fastr.core.link.Link attribute) (fastr.core.node.Node attribute) (fastr.core.samples.SampleCollection attribute) (fastr.datatypes.BaseDataType attribute) (fastr.execution.linkrun.LinkRun attribute) (fastr.execution.noderun.NodeRun attribute) parse() (fastr.utils.schematotable.SchemaPrinter method) parsed_value (fastr.datatypes.BaseDataType attribute) (fastr.datatypes.Deferred attribute) (fastr.datatypes.URLType attribute) PassThroughSerializer (class in fastr.core.serializable) path (fastr.core.tool.Tool attribute) (in module fastr.plugins) path_to_url() (fastr.core.ioplugin.IOPlugin method) (fastr.plugins.FileSystem method) (fastr.plugins.VirtualFileSystem method) pattern_properties_prevalid() (in module fastr.utils.jsonschemaparser) pim_host (fastr.configmanager.Config attribute) pim_register_run() (fastr.utils.pim_publisher.BasePimAPI method) (fastr.utils.pim_publisher.PimAPI_v1 method) (fastr.utils.pim_publisher.PimAPI_v2 method) (fastr.utils.pim_publisher.PimPublisher method) pim_serialize_link() (fastr.utils.pim_publisher.PimAPI_v2 method) pim_serialize_macro() (fastr.utils.pim_publisher.PimAPI_v2 method) pim_serialize_network() (fastr.utils.pim_publisher.PimAPI_v1 method) (fastr.utils.pim_publisher.PimAPI_v2 method) pim_serialize_node() (fastr.utils.pim_publisher.PimAPI_v2 method) PIM_STATUS_MAPPING (fastr.utils.pim_publisher.PimAPI_v1 attribute) (fastr.utils.pim_publisher.PimAPI_v2 attribute) pim_update_status() (fastr.utils.pim_publisher.BasePimAPI method) (fastr.utils.pim_publisher.PimAPI_v1 method) (fastr.utils.pim_publisher.PimAPI_v2 method) (fastr.utils.pim_publisher.PimPublisher method) PimAPI_v1 (class in fastr.utils.pim_publisher) PimAPI_v2 (class in fastr.utils.pim_publisher) PimPublisher (class in fastr.utils.pim_publisher) Plugin (class in fastr.core.baseplugin) plugin_class (fastr.core.datatypemanager.DataTypeManager attribute) (fastr.core.pluginmanager.BasePluginManager attribute) (fastr.core.pluginmanager.PluginManager attribute) (fastr.core.pluginmanager.PluginSubManager attribute) plugin_option_type (class in fastr.core.pluginmanager) PluginManager (class in fastr.core.pluginmanager) PluginMeta (class in fastr.core.baseplugin) plugins_path (fastr.configmanager.Config attribute) PluginState (class in fastr.core.baseplugin) PluginSubManager (class in fastr.core.pluginmanager) PluginsView (class in fastr.core.pluginmanager) poll_datatype() (fastr.core.datatypemanager.DataTypeManager method) pop() (fastr.core.inputgroup.InputGroup method) popitem() (fastr.core.inputgroup.InputGroup method) populate() (fastr.core.basemanager.BaseManager method) (fastr.core.datatypemanager.DataTypeManager method) (fastr.core.ioplugin.IOPluginManager method) (fastr.core.pluginmanager.BasePluginManager method) (fastr.core.toolmanager.ToolManager method)

post() (fastr.web.api.RunListApi method) preference (fastr.datatypes.TypeGroup attribute) preferred_types (fastr.configmanager.Config attribute) (fastr.core.datatypemanager.DataTypeManager attribute) (fastr.core.inputoutput.Output attribute) (fastr.core.inputoutput.SubOutput attribute) (fastr.execution.inputoutputrun.OutputRun attribute) (fastr.execution.inputoutputrun.SubOutputRun attribute) preload (fastr.core.baseplugin.PluginState attribute) prepend() (fastr.configmanager.EmptyDefault method) primary (fastr.core.inputgroup.InputGroup attribute) print_help() (in module fastr.utils.cmd) print_job_result() (in module fastr.utils.cmd.trace) print_result() (fastr.core.ioplugin.IOPlugin static method) print_sample_sink() (in module fastr.utils.cmd.trace) print_samples() (in module fastr.utils.cmd.trace) print_sinks() (in module fastr.utils.cmd.trace) printlines() (fastr.utils.schematotable.SchemaPrinter method) process_callbacks() (fastr.execution.executionpluginmanager.ExecutionPlugin method) process_pool_worker_number (fastr.configmanager.Config attribute) processing_callback (fastr.execution.job.JobState attribute) ProcessPoolExecution (class in fastr.plugins) ProcessUsageCollection (class in fastr.core.target) properties_postvalidate() (in module fastr.utils.jsonschemaparser) properties_prevalidate() (in module fastr.utils.jsonschemaparser) protected_modules (fastr.configmanager.Config attribute) prov() (in module fastr.web.views) PROV_DUMP (fastr.execution.job.Job attribute) Provenance (class in fastr.core.provenance) provenance (fastr.datatypes.Deferred attribute) provfile (fastr.execution.job.Job attribute) ProvNFile (class in fastr.datatypes) provurl (fastr.execution.job.Job attribute) pull_source_data() (fastr.core.ioplugin.IOPlugin method) (fastr.core.ioplugin.IOPluginManager method) push_sink_data() (fastr.core.ioplugin.IOPlugin method) (fastr.core.ioplugin.IOPluginManager method) (fastr.plugins.Reference method) put_url() (fastr.core.ioplugin.IOPlugin method) (fastr.core.ioplugin.IOPluginManager method) (fastr.plugins.FileSystem method) (fastr.plugins.Null method) (fastr.plugins.VirtualFileSystem method) (fastr.plugins.XNATStorage method) put_value() (fastr.core.ioplugin.IOPlugin method) (fastr.plugins.FileSystem method) (fastr.plugins.Null method) (fastr.plugins.VirtualFileSystem method) Python Enhancement Proposals PEP 8, [1] PEP 8#class-names PEP 8#global-variable-names PEP 8#method-names-and-instance-variables PEP 8#package-and-module-names PEP 8#prescriptive-naming-conventions

Q

queue (fastr.execution.executionpluginmanager.JobAction attribute)

queue_job() (fastr.execution.executionpluginmanager.ExecutionPlugin method) queued (fastr.execution.job.JobState attribute)

R

raw_value (fastr.datatypes.BaseDataType attribute) read_bytes (fastr.core.target.SystemUsageInfo attribute) read_config() (fastr.configmanager.Config method) read_config_files (fastr.configmanager.Config attribute) read_config_string() (fastr.configmanager.Config method) read_sink_data() (in module fastr.utils.cmd.trace) readfastrschema() (fastr.utils.jsonschemaparser.FastrRefResolver static method) readfile() (fastr.utils.jsonschemaparser.FastrRefResolver static method) Reference (class in fastr.plugins) references (fastr.core.tool.Tool attribute) register_configuration() (fastr.core.baseplugin.BasePlugin class method) register_fields() (fastr.configmanager.Config method) register_job() (fastr.execution.executionpluginmanager.ExecutionPlugin method) register_url_scheme() (fastr.core.ioplugin.IOPluginManager static method) (in module fastr.data.url) release_job() (fastr.execution.executionpluginmanager.ExecutionPlugin method) reload() (fastr.core.basemanager.BaseManager method) (fastr.execution.environmentmodules.EnvironmentModules method) remove() (fastr.__init__.Network method) (fastr.core.inputoutput.Input method) (fastr.core.inputoutput.SubInput method) (fastr.core.network.Network method) (fastr.execution.inputoutputrun.InputRun method) request_parser (fastr.web.api.RunListApi attribute) required (fastr.core.inputoutput.BaseInputOutput attribute) required_cores (fastr.__init__.Node attribute) (fastr.core.node.Node attribute) (fastr.execution.job.Job attribute) (fastr.execution.noderun.NodeRun attribute)

required_memory (fastr.__init__.Node attribute) (fastr.core.node.Node attribute) (fastr.execution.job.Job attribute) (fastr.execution.noderun.NodeRun attribute) required_time (fastr.__init__.Node attribute) (fastr.core.node.Node attribute) (fastr.execution.job.Job attribute) (fastr.execution.noderun.NodeRun attribute) requirements (fastr.core.tool.Tool attribute) resourcesdir (fastr.configmanager.Config attribute) RESULT_DUMP (fastr.execution.job.Job attribute) resulting_datatype (fastr.core.inputoutput.Output attribute) (fastr.core.inputoutput.SubOutput attribute) (fastr.execution.inputoutputrun.OutputRun attribute) (fastr.execution.inputoutputrun.SubOutputRun attribute) rmem (fastr.core.target.SystemUsageInfo attribute) RQExecution (class in fastr.plugins) Run (class in fastr.web.api) run_command() (fastr.core.target.Target method) (fastr.plugins.DockerTarget method) (fastr.plugins.LocalBinaryTarget method) (fastr.plugins.SingularityTarget method) run_job() (fastr.plugins.RQExecution class method) run_network() (fastr.web.api.Run method) RunApi (class in fastr.web.api) runapp() (in module fastr.web.run) RunListApi (class in fastr.web.api) running (fastr.execution.job.JobState attribute)

S

SampleBaseId (class in fastr.core.samples) SampleCollection (class in fastr.core.samples) SampleId (class in fastr.core.samples) SampleIndex (class in fastr.core.samples) SampleItem (class in fastr.core.samples) SampleItemBase (class in fastr.core.samples) SamplePayload (class in fastr.core.samples) samples (fastr.core.inputoutput.SubOutput attribute) (fastr.core.samples.ContainsSamples attribute) (fastr.execution.inputoutputrun.OutputRun attribute) (fastr.execution.inputoutputrun.SubOutputRun attribute) SampleValue (class in fastr.core.samples) save_gpickle() (in module fastr.utils.iohelpers) save_json() (in module fastr.utils.iohelpers) save_version() (in module fastr.version) SBATCH (fastr.plugins.SlurmExecution attribute) SCANCEL (fastr.plugins.SlurmExecution attribute) schemadir (fastr.configmanager.Config attribute) SchemaPrinter (class in fastr.utils.schematotable) scheme (fastr.core.ioplugin.IOPlugin attribute) (fastr.plugins.CommaSeperatedValueFile attribute) (fastr.plugins.FileSystem attribute) (fastr.plugins.Null attribute) (fastr.plugins.Reference attribute) (fastr.plugins.VirtualFileSystem attribute) (fastr.plugins.VirtualFileSystemRegularExpression attribute) (fastr.plugins.VirtualFileSystemValueList attribute) (fastr.plugins.XNATStorage attribute) SCONTROL (fastr.plugins.SlurmExecution attribute) send_job() (fastr.plugins.DRMAAExecution method) sequence_part() (fastr.core.samples.SampleValue method) Serializable (class in fastr.core.serializable) serialize() (fastr.core.provenance.Provenance method) SERIALIZERS (fastr.core.serializable.Serializable attribute) server (fastr.plugins.XNATStorage attribute) set_code() (fastr.core.baseplugin.BasePlugin class method) set_data() (fastr.__init__.ConstantNode method) (fastr.__init__.SourceNode method) (fastr.core.node.ConstantNode method) (fastr.core.node.SourceNode method) (fastr.execution.networkrun.NetworkRun method) (fastr.execution.sinknoderun.SinkNodeRun method) (fastr.execution.sourcenoderun.ConstantNodeRun method) (fastr.execution.sourcenoderun.SourceNodeRun method) set_field() (fastr.configmanager.Config method) set_result() (fastr.execution.flownoderun.AdvancedFlowNodeRun method) (fastr.execution.flownoderun.FlowNodeRun method) (fastr.execution.noderun.NodeRun method) (fastr.execution.sinknoderun.SinkNodeRun method) set_status() (fastr.core.baseplugin.BasePlugin class method) setdefault() (fastr.core.inputgroup.InputGroup method) setup() (fastr.core.ioplugin.IOPlugin method) (fastr.plugins.VirtualFileSystem method) sha1_checksum() (in module fastr.utils.checksum) show_jobs() (fastr.execution.executionpluginmanager.ExecutionPlugin method) shutdown() (in module fastr.web.views) shutdown_server() (in module fastr.web.views) signal_dependent_jobs() (fastr.execution.executionpluginmanager.ExecutionPlugin method) SINGULARITY_BIN (fastr.plugins.SingularityTarget attribute) SingularityTarget (class in fastr.plugins) sink_data() (in module fastr.examples.add_ints) (in module fastr.examples.add_ints_s3) (in module fastr.examples.chunk_test) (in module fastr.examples.collapse) (in module fastr.examples.collapse_expand) (in module fastr.examples.cross_validation) (in module fastr.examples.elastix_nipype) (in module fastr.examples.expand) (in module fastr.examples.failing_macro) (in module fastr.examples.failing_network) (in module fastr.examples.filecopy) (in module fastr.examples.input_groups) (in module fastr.examples.macro_node) (in module fastr.examples.macro_node2) (in module fastr.examples.shift_links) (in module fastr.examples.source_sink) SINK_DUMP_FILE_NAME (fastr.__init__.Network attribute) (fastr.core.network.Network attribute) (fastr.execution.networkrun.NetworkRun attribute) SinkJob (class in fastr.execution.job) sinklist (fastr.execution.networkrun.NetworkRun attribute) SinkNode (class in fastr.__init__) (class in fastr.core.node) SinkNodeRun (class in fastr.__init__) (class in fastr.execution.sinknoderun) size (fastr.core.dimension.Dimension attribute) (fastr.core.dimension.HasDimensions attribute) (fastr.execution.inputoutputrun.SourceOutputRun attribute) (fastr.execution.linkrun.LinkRun attribute) slurm_job_check_interval (fastr.configmanager.Config attribute) slurm_partition (fastr.configmanager.Config attribute) SlurmExecution (class in fastr.plugins) solve_broadcast() (fastr.core.inputgroup.InputGroup class method) source (fastr.__init__.Link attribute) (fastr.Link attribute) (fastr.core.dimension.ForwardsDimensions attribute) (fastr.core.inputoutput.Input attribute) (fastr.core.inputoutput.SubInput attribute) (fastr.core.link.Link attribute) (fastr.execution.inputoutputrun.InputRun attribute) (fastr.execution.inputoutputrun.SubInputRun attribute) (fastr.execution.linkrun.LinkRun attribute)

source_code (fastr.core.baseplugin.BasePlugin attribute) source_data() (in module fastr.examples.add_ints) (in module fastr.examples.add_ints_s3) (in module fastr.examples.chunk_test) (in module fastr.examples.collapse) (in module fastr.examples.collapse_expand) (in module fastr.examples.cross_validation) (in module fastr.examples.elastix_nipype) (in module fastr.examples.expand) (in module fastr.examples.failing_macro) (in module fastr.examples.failing_network) (in module fastr.examples.filecopy) (in module fastr.examples.input_groups) (in module fastr.examples.macro_node) (in module fastr.examples.macro_node2) (in module fastr.examples.shift_links) (in module fastr.examples.source_sink) SOURCE_DUMP_FILE_NAME (fastr.__init__.Network attribute) (fastr.core.network.Network attribute) (fastr.execution.networkrun.NetworkRun attribute) source_job_limit (fastr.configmanager.Config attribute) source_output (fastr.core.inputoutput.SubInput attribute) (fastr.execution.inputoutputrun.SubInputRun attribute) sourcegroup (fastr.__init__.SourceNode attribute) (fastr.core.node.SourceNode attribute) (fastr.execution.sourcenoderun.SourceNodeRun attribute) SourceJob (class in fastr.execution.job) sourcelist (fastr.execution.networkrun.NetworkRun attribute) SourceNode (class in fastr.__init__) (class in fastr.core.node) SourceNodeRun (class in fastr.__init__) (class in fastr.execution.sourcenoderun) SourceOutput (class in fastr.core.inputoutput) SourceOutputRun (class in fastr.execution.inputoutputrun) spec_fields (fastr.plugins.DRMAAExecution attribute) split() (in module fastr.data.url) SQUEUE (fastr.plugins.SlurmExecution attribute) SQUEUE_FORMAT (fastr.plugins.SlurmExecution attribute) status (fastr.__init__.Link attribute) (fastr.__init__.Node attribute) (fastr.core.baseplugin.BasePlugin attribute) (fastr.core.link.Link attribute) (fastr.core.node.Node attribute) (fastr.core.version.Version attribute) (fastr.execution.job.Job attribute) (fastr.execution.linkrun.LinkRun attribute) (fastr.execution.noderun.NodeRun attribute) status() (fastr.web.api.Run method) STATUS_MAPPING (fastr.plugins.SlurmExecution attribute) status_message (fastr.core.baseplugin.BasePlugin attribute) STATUS_TYPES (fastr.utils.pim_publisher.PimAPI_v2 attribute) StatusApi (class in fastr.web.api) STDERR_DUMP (fastr.execution.job.Job attribute) stderrfile (fastr.execution.job.Job attribute) stderrurl (fastr.execution.job.Job attribute) stdout (in module fastr.plugins) STDOUT_DUMP (fastr.execution.job.Job attribute) stdoutfile (fastr.execution.job.Job attribute) stdouturl (fastr.execution.job.Job attribute) store() (fastr.utils.filesynchelper.FileSyncHelper method) String (class in fastr.datatypes) StrongrExecution (class in fastr.plugins) SubInput (class in fastr.core.inputoutput) SubInputRun (class in fastr.execution.inputoutputrun) submit_jobs() (fastr.plugins.DRMAAExecution method) SubOutput (class in fastr.core.inputoutput) SubOutputRun (class in fastr.execution.inputoutputrun) SubprocessBasedTarget (class in fastr.core.target) substitute() (fastr.execution.job.SinkJob method) SubUrl (class in fastr.web.api) suffix (fastr.core.version.Version attribute) SUPPORTED_APIS (fastr.utils.pim_publisher.PimPublisher attribute) SUPPORTS_CANCEL (fastr.execution.executionpluginmanager.ExecutionPlugin attribute) (fastr.plugins.DRMAAExecution attribute) (fastr.plugins.SlurmExecution attribute) SUPPORTS_DEPENDENCY (fastr.execution.executionpluginmanager.ExecutionPlugin attribute) (fastr.plugins.DRMAAExecution attribute) (fastr.plugins.SlurmExecution attribute) SUPPORTS_HOLD_RELEASE (fastr.execution.executionpluginmanager.ExecutionPlugin attribute) (fastr.plugins.DRMAAExecution attribute) (fastr.plugins.SlurmExecution attribute) swap() (fastr.execution.environmentmodules.EnvironmentModules method) switch_sample_sink() (in module fastr.utils.cmd.trace) sync() (fastr.execution.environmentmodules.EnvironmentModules method) systemdir (fastr.configmanager.Config attribute) SystemUsageInfo (class in fastr.core.target)

T

tags (fastr.core.tool.Tool attribute) Target (class in fastr.core.target) target (fastr.__init__.Link attribute) (fastr.Link attribute) (fastr.core.link.Link attribute) (fastr.core.tool.Tool attribute) (fastr.datatypes.Deferred attribute) (fastr.execution.linkrun.LinkRun attribute) TargetManager (class in fastr.core.target) test() (fastr.__init__.Network class method) (fastr.core.baseplugin.BasePlugin class method) (fastr.core.interface.Interface class method) (fastr.core.network.Network class method) (fastr.core.target.Target class method) (fastr.core.tool.Tool method) (fastr.datatypes.BaseDataType class method) (fastr.plugins.BlockingExecution class method) (fastr.plugins.DRMAAExecution class method) (fastr.plugins.LinearExecution class method) (fastr.plugins.NipypeInterface class method) (fastr.plugins.ProcessPoolExecution class method) (fastr.plugins.RQExecution class method) (fastr.plugins.SingularityTarget class method) (fastr.plugins.SlurmExecution class method) (fastr.plugins.StrongrExecution class method) test_plugin() (fastr.core.pluginmanager.BasePluginManager method) test_spec (fastr.core.tool.Tool attribute) test_tool() (fastr.core.tool.Tool class method) TifImageFile (class in fastr.datatypes) timestamp (fastr.core.target.SystemUsageInfo attribute)

tmpurl (fastr.execution.job.Job attribute) (fastr.execution.job.SinkJob attribute) todict() (fastr.core.objectmanager.ObjectManager method) Tool (class in fastr.core.tool) tool (fastr.__init__.Node attribute) (fastr.core.node.Node attribute) (fastr.execution.job.Job attribute) (fastr.execution.noderun.NodeRun attribute) tool() (in module fastr.utils.cmd.test) (in module fastr.web.views) TOOL_REFERENCE_FILE_NAME (fastr.core.tool.Tool attribute) TOOL_RESULT_FILE_NAME (fastr.core.tool.Tool attribute) ToolApi (class in fastr.web.api) toollist (fastr attribute) (in module fastr.__init__) (in module fastr.core.toolmanager) ToolListApi (class in fastr.web.api) ToolManager (class in fastr.core.toolmanager) tools_path (fastr.configmanager.Config attribute) toolversions() (fastr.core.toolmanager.ToolManager method) TORQUE_NATIVE_SPEC (fastr.plugins.DRMAAExecution attribute) tostring_modvalue() (fastr.execution.environmentmodules.EnvironmentModules static method) totuple_modvalue() (fastr.execution.environmentmodules.EnvironmentModules static method) translate_argument() (fastr.execution.job.Job class method) translate_output_results() (fastr.execution.job.Job static method) translate_results() (fastr.execution.job.Job method) TxtFile (class in fastr.datatypes) TypeGroup (class in fastr.datatypes) typelist (fastr attribute) (in module fastr.__init__) types_path (fastr.configmanager.Config attribute)

U

uninitialized (fastr.core.baseplugin.PluginState attribute) unload() (fastr.execution.environmentmodules.EnvironmentModules method) unloaded (fastr.core.baseplugin.PluginState attribute) unmerge() (fastr.core.inputgroupcombiner.BaseInputGroupCombiner method) (fastr.core.inputgroupcombiner.DefaultInputGroupCombiner method) (fastr.core.inputgroupcombiner.MergingInputGroupCombiner method) UnsignedInt (class in fastr.datatypes) update() (fastr.configmanager.EmptyDefault method) (fastr.core.inputgroup.InputGroup method) (fastr.core.inputgroupcombiner.BaseInputGroupCombiner method) (fastr.core.inputgroupcombiner.MergingInputGroupCombiner method) (fastr.core.updateable.Updateable method) update_input_groups() (fastr.__init__.Node method) (fastr.core.node.Node method) (fastr.execution.noderun.NodeRun method)

update_job_result() (in module fastr.web.api) update_size() (fastr.core.dimension.Dimension method) update_status() (in module fastr.web.api) Updateable (class in fastr.core.updateable) UpdateableMeta (class in fastr.core.updateable) updatetrigger() (fastr.core.updateable.UpdateableMeta static method) upload() (fastr.plugins.XNATStorage static method) url (fastr.core.tool.Tool attribute) url_to_path() (fastr.core.ioplugin.IOPlugin method) (fastr.core.ioplugin.IOPluginManager method) (fastr.plugins.FileSystem method) (fastr.plugins.VirtualFileSystem method) URLType (class in fastr.datatypes) usage_type (fastr.core.target.ProcessUsageCollection attribute) userdir (fastr.configmanager.Config attribute)

V

valid (fastr.__init__.SourceNode attribute) (fastr.core.inputoutput.Output attribute) (fastr.core.node.SourceNode attribute) (fastr.core.updateable.Updateable attribute) (fastr.datatypes.BaseDataType attribute) (fastr.datatypes.URLType attribute) (fastr.execution.inputoutputrun.OutputRun attribute) (fastr.execution.sourcenoderun.SourceNodeRun attribute) validate_results() (fastr.execution.job.Job method) (fastr.execution.job.SinkJob method) (fastr.execution.job.SourceJob method) value (fastr.datatypes.BaseDataType attribute) (fastr.datatypes.Boolean attribute) (fastr.datatypes.Deferred attribute) (fastr.datatypes.Float attribute) (fastr.datatypes.Int attribute) (fastr.datatypes.UnsignedInt attribute)

ValueType (class in fastr.datatypes) verify_resource_loading() (in module fastr.utils.verify) verify_tool() (in module fastr.utils.verify) Version (class in fastr.core.version) version (fastr.core.tool.Tool attribute) (fastr.datatypes.BaseDataType attribute) (fastr.datatypes.EnumType attribute) version_matcher (fastr.core.version.Version attribute) VirtualFileSystem (class in fastr.plugins) VirtualFileSystemRegularExpression (class in fastr.plugins) VirtualFileSystemValueList (class in fastr.plugins) vmem (fastr.core.target.SystemUsageInfo attribute)

W

wait_for_file() (fastr.utils.filesynchelper.FileSyncHelper method) wait_for_job() (fastr.utils.filesynchelper.FileSyncHelper method) wait_for_pickle() (fastr.utils.filesynchelper.FileSyncHelper method) wait_for_vfs_url() (fastr.utils.filesynchelper.FileSyncHelper method) warn_develop (fastr.configmanager.Config attribute) web_hostname (fastr.configmanager.Config attribute)

web_port (fastr.configmanager.Config attribute) web_secret_key (fastr.configmanager.Config attribute) web_url() (fastr.configmanager.Config method) websocket_client() (in module fastr.web.views) which() (in module fastr.utils.procutils) write() (fastr.execution.job.Job method) write_bytes (fastr.core.target.SystemUsageInfo attribute)

X

x (fastr.configmanager.Config attribute)

xnat (fastr.plugins.XNATStorage attribute) XNATStorage (class in fastr.plugins)