#!/usr/bin/env python
# Copyright 2011-2014 Biomedical Imaging Group Rotterdam, Departments of
# Medical Informatics and Radiology, Erasmus MC, Rotterdam, The Netherlands
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import fastr
IS_TEST = True
[docs]def create_network():
network = fastr.Network(id_="cross_validation")
source1 = network.create_source('Int', id_='numbers')
cv_node = network.create_node('CrossValidation', id_='crossvalidtion')
cv_node.inputs['items'] = source1.output
cv_node.inputs['method'] = ['KFold']
cv_node.inputs['number_of_folds'] = [3]
cv_node.outputs['train'].preferred_types = fastr.datatypes.Int
cv_node.outputs['test'].preferred_types = fastr.datatypes.Int
product_node = network.create_node('Multiply', id_='multiply')
product_node.inputs['left_hand'] = cv_node.outputs['train']
product_node.inputs['right_hand'] = cv_node.outputs['test']
product_node.inputs['right_hand'].input_group = 'right'
product_node.outputs['result'].preferred_types = fastr.datatypes.Float
product_node.merge_dimensions = 'all'
sum_node = network.create_node('Sum', id_='sum')
link = network.create_link(product_node.outputs['result'], sum_node.inputs['values'])
link.collapse = 'numbers_train'
sink = network.create_sink('Int', id_='sink')
sink.input = sum_node.outputs['result']
return network
[docs]def source_data(network):
return {'numbers': list(range(5))}
[docs]def sink_data(network):
return {'sink': 'vfs://tmp/results/{}/result_{{sample_id}}_{{cardinality}}{{ext}}'.format(network.id)}
[docs]def main():
print(""" WARNING: experimental feature ;) """)
print(""" Please run "pip install sklearn" to make use of the experimental cross validation flow. """)
network = create_network()
network.draw_network(img_format='svg', draw_dimension=True)
network.execute(source_data(network), sink_data(network))
if __name__ == '__main__':
main()