# Copyright 2011-2014 Biomedical Imaging Group Rotterdam, Departments of
# Medical Informatics and Radiology, Erasmus MC, Rotterdam, The Netherlands
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import imp
import os
import shutil
import fastr
[docs]def create_reference(example_path):
example_base, _ = os.path.splitext(os.path.basename(example_path))
example_module = imp.load_source(example_base, example_path)
if hasattr(example_module, 'IS_TEST') and getattr(example_module, 'IS_TEST'):
network = example_module.create_network()
output_directory = './data/reference/{n.id}_{n.version}'.format(n=network)
if os.path.exists(output_directory):
fastr.log.info('Skipping creation of {}, already exists!'.format(output_directory))
return
# Do not publish this to PIM
fastr.config.pim_host = '' # Do not publish anything to PIM
source_data = example_module.source_data(network)
network.create_reference(source_data=source_data, output_directory=output_directory)
shutil.rmtree(os.path.join(output_directory, '__fastr_run_tmp__'))
[docs]def generate_all_references():
examples_dir = fastr.config.examplesdir
examples = [os.path.abspath(os.path.join(examples_dir, x)) for x in os.listdir(examples_dir) if x.endswith('.py')]
for example in examples:
create_reference(example)
if __name__ == '__main__':
generate_all_references()