#!/usr/bin/env python
# Copyright 2011-2014 Biomedical Imaging Group Rotterdam, Departments of
# Medical Informatics and Radiology, Erasmus MC, Rotterdam, The Netherlands
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import argparse
import os
import fastr
import fastr.execution.executionscript
[docs]def get_parser():
parser = argparse.ArgumentParser(description="Execute a job or network from commandline")
parser.add_argument('job', metavar='JOBFILE', nargs='?', type=str,
help='File of the job to execute (default ./__fastr_command__.pickle.gz)')
return parser
[docs]def main(args=None, unknown_args=None):
"""
Execute a fastr job file
"""
if args is None and unknown_args is None:
# No arguments were parsed yet, parse them now
parser = get_parser()
args, unknown_args = parser.parse_known_args()
if args.job is not None:
job = args.job
else:
curdir_contents = os.listdir('.')
if '__fastr_command__.pickle.gz' in curdir_contents:
job = '__fastr_command__.pickle.gz'
else:
fastr.log.critical('No job given and cannot find __fastr_command__.pickle.gz in current directory!')
exit()
fastr.execution.executionscript.main(job)
if __name__ == '__main__':
main()