Source code for fastr.utils.cmd.execute

# Copyright 2011-2014 Biomedical Imaging Group Rotterdam, Departments of
# Medical Informatics and Radiology, Erasmus MC, Rotterdam, The Netherlands
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

import argparse
import os
import fastr
import fastr.execution.executionscript
from fastr.utils.cmd import add_parser_doc_link
from fastr.execution.job import Job


[docs]def get_parser(): parser = argparse.ArgumentParser(description="Execute a job from commandline.") parser.add_argument('job', metavar='JOBFILE', nargs='?', type=str, help=f'File of the job to execute (default ./{Job.COMMAND_DUMP})') return parser
[docs]def main(): """ Execute a fastr job file """ # No arguments were parsed yet, parse them now parser = add_parser_doc_link(get_parser(), __file__) args = parser.parse_args() job = args.job if job is None: curdir_contents = os.listdir('.') if Job.COMMAND_DUMP in curdir_contents: job = Job.COMMAND_DUMP else: fastr.log.critical(f'No job given and cannot find {Job.COMMAND_DUMP} in current directory!') exit() fastr.execution.executionscript.main(job)
if __name__ == '__main__': main()