Index

_ | A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | Q | R | S | T | U | V | W | X

_

__abstractmethods__ (fastr.__init__.ConstantNode attribute)
(fastr.__init__.Link attribute)
(fastr.__init__.Node attribute)
(fastr.__init__.SourceNode attribute)
(fastr.core.basemanager.BaseManager attribute)
(fastr.core.baseplugin.BasePlugin attribute)
(fastr.core.baseplugin.Plugin attribute)
(fastr.core.datatypemanager.DataTypeManager attribute)
(fastr.core.dimension.HasDimensions attribute)
(fastr.core.inputoutput.AdvancedFlowOutput attribute)
(fastr.core.inputoutput.BaseInput attribute)
(fastr.core.inputoutput.BaseInputOutput attribute)
(fastr.core.inputoutput.BaseOutput attribute)
(fastr.core.inputoutput.Input attribute)
(fastr.core.inputoutput.Output attribute)
(fastr.core.inputoutput.SourceOutput attribute)
(fastr.core.inputoutput.SubInput attribute)
(fastr.core.inputoutput.SubOutput attribute)
(fastr.core.interface.Interface attribute)
(fastr.core.interface.InterfacePluginManager attribute)
(fastr.core.ioplugin.IOPlugin attribute)
(fastr.core.ioplugin.IOPluginManager attribute)
(fastr.core.link.Link attribute)
(fastr.core.networkmanager.NetworkManager attribute)
(fastr.core.node.AdvancedFlowNode attribute)
(fastr.core.node.ConstantNode attribute)
(fastr.core.node.FlowNode attribute)
(fastr.core.node.InputGroup attribute)
(fastr.core.node.MacroNode attribute)
(fastr.core.node.Node attribute)
(fastr.core.node.SinkNode attribute)
(fastr.core.node.SourceNode attribute)
(fastr.core.objectmanager.ObjectManager attribute)
(fastr.core.pluginmanager.BasePluginManager attribute)
(fastr.core.pluginmanager.PluginManager attribute)
(fastr.core.pluginmanager.PluginSubManager attribute)
(fastr.core.pluginmanager.PluginsView attribute)
(fastr.core.samples.HasSamples attribute)
(fastr.core.samples.SampleCollection attribute)
(fastr.core.samples.SampleValue attribute)
(fastr.core.target.DockerTarget attribute)
(fastr.core.target.LocalBinaryTarget attribute)
(fastr.core.target.ProcessUsageCollection attribute)
(fastr.core.target.Target attribute)
(fastr.core.toolmanager.ToolManager attribute)
(fastr.core.updateable.Updateable attribute)
(fastr.datatypes.AnalyzeImageFile attribute)
(fastr.datatypes.AnyFile attribute)
(fastr.datatypes.AnyType attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.Boolean attribute)
(fastr.datatypes.DataType attribute)
(fastr.datatypes.Deferred attribute)
(fastr.datatypes.Directory attribute)
(fastr.datatypes.EnumType attribute)
(fastr.datatypes.Float attribute)
(fastr.datatypes.ITKImageFile attribute)
(fastr.datatypes.Int attribute)
(fastr.datatypes.MetaImageFile attribute)
(fastr.datatypes.NiftiImageFile attribute)
(fastr.datatypes.NiftiImageFileCompressed attribute)
(fastr.datatypes.NiftiImageFileUncompressed attribute)
(fastr.datatypes.Number attribute)
(fastr.datatypes.String attribute)
(fastr.datatypes.TifImageFile attribute)
(fastr.datatypes.TypeGroup attribute)
(fastr.datatypes.URLType attribute)
(fastr.datatypes.UnsignedInt attribute)
(fastr.datatypes.ValueType attribute)
(fastr.datatypes.__ioplugin__behaviour__Enum__ attribute)
(fastr.execution.executionpluginmanager.ExecutionPlugin attribute)
(fastr.execution.executionpluginmanager.ExecutionPluginManager attribute)
(fastr.plugins.BlockingExecution attribute)
(fastr.plugins.CommaSeperatedValueFile attribute)
(fastr.plugins.CrossValidation attribute)
(fastr.plugins.DRMAAExecution attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FileSystem attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.plugins.LinearExecution attribute)
(fastr.plugins.NipypeInterface attribute)
(fastr.plugins.Null attribute)
(fastr.plugins.ProcessPoolExecution attribute)
(fastr.plugins.RQExecution attribute)
(fastr.plugins.Reference attribute)
(fastr.plugins.VirtualFileSystem attribute)
(fastr.plugins.VirtualFileSystemRegularExpression attribute)
(fastr.plugins.VirtualFileSystemValueList attribute)
(fastr.plugins.XNATStorage attribute)
__add__() (fastr.configmanager.EmptyDefault method)
(fastr.core.samples.SampleBaseId method)
(fastr.core.samples.SampleItemBase method)
(fastr.core.samples.SamplePayload method)
(fastr.core.samples.SampleValue method)
__contains__() (fastr.core.objectmanager.ObjectManager method)
(fastr.core.samples.HasSamples method)
(fastr.core.samples.SampleCollection method)
__dataschemafile__ (fastr.__init__.ConstantNode attribute)
(fastr.__init__.Link attribute)
(fastr.__init__.Network attribute)
(fastr.__init__.Node attribute)
(fastr.__init__.SourceNode attribute)
(fastr.core.link.Link attribute)
(fastr.core.network.Network attribute)
(fastr.core.node.ConstantNode attribute)
(fastr.core.node.Node attribute)
(fastr.core.node.SinkNode attribute)
(fastr.core.node.SourceNode attribute)
(fastr.core.tool.Tool attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FlowInterface attribute)
__del__() (fastr.execution.executionpluginmanager.ExecutionPlugin method)
__delitem__() (fastr.configmanager.EmptyDefault method)
(fastr.core.basemanager.BaseManager method)
(fastr.core.node.InputGroup method)
(fastr.core.pluginmanager.PluginsView method)
(fastr.core.samples.SampleCollection method)
(fastr.core.samples.SampleValue method)
__dict__ (fastr.configmanager.Config attribute)
(fastr.configmanager.EmptyDefault attribute)
(fastr.core.baseplugin.BasePlugin attribute)
(fastr.core.dimension.Dimension attribute)
(fastr.core.dimension.HasDimensions attribute)
(fastr.core.interface.InputSpec attribute)
(fastr.core.interface.InterfaceResult attribute)
(fastr.core.interface.OutputSpec attribute)
(fastr.core.node.DefaultInputGroupCombiner attribute)
(fastr.core.pluginmanager.plugin_option_type attribute)
(fastr.core.provenance.Provenance attribute)
(fastr.core.samples.HasSamples attribute)
(fastr.core.samples.SampleBaseId attribute)
(fastr.core.samples.SampleItemBase attribute)
(fastr.core.serializable.PassThroughSerializer attribute)
(fastr.core.serializable.Serializable attribute)
(fastr.core.target.SystemUsageInfo attribute)
(fastr.core.target.Target attribute)
(fastr.core.updateable.Updateable attribute)
(fastr.core.version.Version attribute)
(fastr.execution.environmentmodules.EnvironmentModules attribute)
(fastr.execution.networkanalyzer.NetworkAnalyzer attribute)
(fastr.execution.networkchunker.NetworkChunker attribute)
(fastr.utils.classproperty.ClassPropertyDescriptor attribute)
(fastr.utils.schematotable.SchemaPrinter attribute)
(fastr.web.api.Run attribute)
__enter__() (fastr.core.target.DockerTarget method)
(fastr.core.target.LocalBinaryTarget method)
(fastr.core.target.Target method)
(fastr.execution.executionpluginmanager.ExecutionPlugin method)
__eq__() (fastr.__init__.Link method)
(fastr.__init__.Network method)
(fastr.__init__.Node method)
(fastr.__init__.SourceNode method)
(fastr.core.inputoutput.Input method)
(fastr.core.inputoutput.Output method)
(fastr.core.inputoutput.SubInput method)
(fastr.core.inputoutput.SubOutput method)
(fastr.core.link.Link method)
(fastr.core.network.Network method)
(fastr.core.node.Node method)
(fastr.core.node.SourceNode method)
(fastr.core.tool.Tool method)
(fastr.datatypes.BaseDataType method)
(fastr.datatypes.Directory method)
(fastr.datatypes.MetaImageFile method)
(fastr.datatypes.URLType method)
(fastr.plugins.FastrInterface method)
(fastr.plugins.FlowInterface method)
(fastr.plugins.NipypeInterface method)
__exit__() (fastr.core.target.DockerTarget method)
(fastr.core.target.LocalBinaryTarget method)
(fastr.core.target.Target method)
(fastr.execution.executionpluginmanager.ExecutionPlugin method)
__format__() (fastr.core.baseplugin.PluginState method)
(fastr.execution.executionpluginmanager.JobAction method)
(fastr.execution.job.JobState method)
__get__() (fastr.utils.classproperty.ClassPropertyDescriptor method)
__getattr__() (fastr.configmanager.Config method)
(fastr.core.pluginmanager.LazyModule method)
__getitem__() (fastr.__init__.Link method)
(fastr.__init__.Network method)
(fastr.configmanager.EmptyDefault method)
(fastr.core.basemanager.BaseManager method)
(fastr.core.inputoutput.Input method)
(fastr.core.inputoutput.Output method)
(fastr.core.inputoutput.SourceOutput method)
(fastr.core.inputoutput.SubInput method)
(fastr.core.inputoutput.SubOutput method)
(fastr.core.link.Link method)
(fastr.core.network.Network method)
(fastr.core.node.InputGroup method)
(fastr.core.objectmanager.ObjectManager method)
(fastr.core.pluginmanager.BasePluginManager method)
(fastr.core.pluginmanager.PluginsView method)
(fastr.core.samples.HasSamples method)
(fastr.core.samples.SampleCollection method)
(fastr.core.samples.SampleValue method)
(fastr.core.target.ProcessUsageCollection method)
__getnewargs__() (fastr.core.pluginmanager.plugin_option_type method)
(fastr.core.samples.SampleItemBase method)
(fastr.core.target.SystemUsageInfo method)
__getstate__() (fastr.__init__.ConstantNode method)
(fastr.__init__.Link method)
(fastr.__init__.Network method)
(fastr.__init__.Node method)
(fastr.__init__.SourceNode method)
(fastr.core.inputoutput.BaseInputOutput method)
(fastr.core.inputoutput.Input method)
(fastr.core.inputoutput.Output method)
(fastr.core.inputoutput.SubInput method)
(fastr.core.inputoutput.SubOutput method)
(fastr.core.interface.Interface method)
(fastr.core.link.Link method)
(fastr.core.network.Network method)
(fastr.core.node.ConstantNode method)
(fastr.core.node.MacroNode method)
(fastr.core.node.Node method)
(fastr.core.node.SinkNode method)
(fastr.core.node.SourceNode method)
(fastr.core.pluginmanager.plugin_option_type method)
(fastr.core.samples.SampleValue method)
(fastr.core.serializable.Serializable method)
(fastr.core.target.SystemUsageInfo method)
(fastr.core.tool.Tool method)
(fastr.core.updateable.Updateable method)
(fastr.datatypes.BaseDataType method)
(fastr.datatypes.Deferred method)
(fastr.execution.job.Job method)
(fastr.plugins.FastrInterface method)
(fastr.plugins.FlowInterface method)
(fastr.plugins.NipypeInterface method)
__iadd__() (fastr.configmanager.EmptyDefault method)
__init__() (fastr.__init__.ConstantNode method)
(fastr.__init__.Link method)
(fastr.__init__.Network method)
(fastr.__init__.Node method)
(fastr.__init__.SourceNode method)
(fastr.configmanager.Config method)
(fastr.configmanager.EmptyDefault method)
(fastr.core.basemanager.BaseManager method)
(fastr.core.baseplugin.BasePlugin method)
(fastr.core.datatypemanager.DataTypeManager method)
(fastr.core.dimension.Dimension method)
(fastr.core.inputoutput.BaseInput method)
(fastr.core.inputoutput.BaseInputOutput method)
(fastr.core.inputoutput.BaseOutput method)
(fastr.core.inputoutput.Input method)
(fastr.core.inputoutput.Output method)
(fastr.core.inputoutput.SourceOutput method)
(fastr.core.inputoutput.SubInput method)
(fastr.core.inputoutput.SubOutput method)
(fastr.core.interface.InterfacePluginManager method)
(fastr.core.interface.InterfaceResult method)
(fastr.core.ioplugin.IOPlugin method)
(fastr.core.ioplugin.IOPluginManager method)
(fastr.core.link.Link method)
(fastr.core.network.Network method)
(fastr.core.node.ConstantNode method)
(fastr.core.node.DefaultInputGroupCombiner method)
(fastr.core.node.FlowNode method)
(fastr.core.node.InputGroup method)
(fastr.core.node.MacroNode method)
(fastr.core.node.MergingInputGroupCombiner method)
(fastr.core.node.Node method)
(fastr.core.node.SinkNode method)
(fastr.core.node.SourceNode method)
(fastr.core.objectmanager.ObjectManager method)
(fastr.core.pluginmanager.BasePluginManager method)
(fastr.core.pluginmanager.LazyModule method)
(fastr.core.pluginmanager.PluginManager method)
(fastr.core.pluginmanager.PluginSubManager method)
(fastr.core.pluginmanager.PluginsView method)
(fastr.core.provenance.Provenance method)
(fastr.core.samples.SampleCollection method)
(fastr.core.samples.SampleValue method)
(fastr.core.target.DockerTarget method)
(fastr.core.target.LocalBinaryTarget method)
(fastr.core.target.ProcessUsageCollection method)
(fastr.core.target.Target method)
(fastr.core.tool.Tool method)
(fastr.core.updateable.Updateable method)
(fastr.datatypes.BaseDataType method)
(fastr.datatypes.DataType method)
(fastr.datatypes.Deferred method)
(fastr.datatypes.EnumType method)
(fastr.datatypes.TypeGroup method)
(fastr.datatypes.URLType method)
(fastr.datatypes.ValueType method)
(fastr.exceptions.FastrError method)
(fastr.exceptions.FastrExecutableNotFoundError method)
(fastr.exceptions.FastrSerializationError method)
(fastr.execution.environmentmodules.EnvironmentModules method)
(fastr.execution.executionpluginmanager.ExecutionPlugin method)
(fastr.execution.executionpluginmanager.ExecutionPluginManager method)
(fastr.execution.job.InlineJob method)
(fastr.execution.job.Job method)
(fastr.execution.job.JobState method)
(fastr.execution.job.SinkJob method)
(fastr.execution.networkchunker.DefaultNetworkChunker method)
(fastr.plugins.BlockingExecution method)
(fastr.plugins.CommaSeperatedValueFile method)
(fastr.plugins.DRMAAExecution method)
(fastr.plugins.FastrInterface method)
(fastr.plugins.FileSystem method)
(fastr.plugins.FlowInterface method)
(fastr.plugins.LinearExecution method)
(fastr.plugins.NipypeInterface method)
(fastr.plugins.Null method)
(fastr.plugins.ProcessPoolExecution method)
(fastr.plugins.RQExecution method)
(fastr.plugins.Reference method)
(fastr.plugins.VirtualFileSystem method)
(fastr.plugins.VirtualFileSystemRegularExpression method)
(fastr.plugins.VirtualFileSystemValueList method)
(fastr.plugins.XNATStorage method)
(fastr.utils.classproperty.ClassPropertyDescriptor method)
(fastr.utils.jsonschemaparser.FastrRefResolver method)
(fastr.utils.schematotable.SchemaPrinter method)
(fastr.web.api.ObjectUrl method)
(fastr.web.api.Run method)
(fastr.web.api.SubUrl method)
__ioplugin__behaviour__Enum__ (class in fastr.datatypes)
__iter__() (fastr.core.basemanager.BaseManager method)
(fastr.core.inputoutput.BaseInputOutput method)
(fastr.core.ioplugin.IOPluginManager method)
(fastr.core.node.DefaultInputGroupCombiner method)
(fastr.core.pluginmanager.PluginsView method)
(fastr.core.samples.HasSamples method)
(fastr.core.samples.SampleCollection method)
(fastr.core.samples.SampleValue method)
__keytransform__() (fastr.core.basemanager.BaseManager method)
(fastr.core.datatypemanager.DataTypeManager method)
(fastr.core.ioplugin.IOPluginManager method)
(fastr.core.objectmanager.ObjectManager method)
__len__() (fastr.core.basemanager.BaseManager method)
(fastr.core.inputoutput.SubOutput method)
(fastr.core.pluginmanager.PluginsView method)
(fastr.core.samples.SampleCollection method)
(fastr.core.samples.SampleValue method)
(fastr.core.target.ProcessUsageCollection method)
__metaclass__ (fastr.__init__.Node attribute)
(fastr.core.basemanager.BaseManager attribute)
(fastr.core.baseplugin.BasePlugin attribute)
(fastr.core.dimension.HasDimensions attribute)
(fastr.core.interface.Interface attribute)
(fastr.core.ioplugin.IOPlugin attribute)
(fastr.core.node.InputGroup attribute)
(fastr.core.node.Node attribute)
(fastr.core.samples.HasSamples attribute)
(fastr.core.target.Target attribute)
(fastr.core.updateable.Updateable attribute)
__module__ (fastr.__init__.ConstantNode attribute)
(fastr.__init__.Link attribute)
(fastr.__init__.Network attribute)
(fastr.__init__.Node attribute)
(fastr.__init__.SourceNode attribute)
(fastr.configmanager.Config attribute)
(fastr.configmanager.EmptyDefault attribute)
(fastr.core.basemanager.BaseManager attribute)
(fastr.core.baseplugin.BasePlugin attribute)
(fastr.core.baseplugin.Plugin attribute)
(fastr.core.baseplugin.PluginMeta attribute)
(fastr.core.baseplugin.PluginState attribute)
(fastr.core.datatypemanager.DataTypeManager attribute)
(fastr.core.dimension.Dimension attribute)
(fastr.core.dimension.HasDimensions attribute)
(fastr.core.inputoutput.AdvancedFlowOutput attribute)
(fastr.core.inputoutput.BaseInput attribute)
(fastr.core.inputoutput.BaseInputOutput attribute)
(fastr.core.inputoutput.BaseOutput attribute)
(fastr.core.inputoutput.Input attribute)
(fastr.core.inputoutput.Output attribute)
(fastr.core.inputoutput.SourceOutput attribute)
(fastr.core.inputoutput.SubInput attribute)
(fastr.core.inputoutput.SubOutput attribute)
(fastr.core.interface.InputSpec attribute)
(fastr.core.interface.Interface attribute)
(fastr.core.interface.InterfacePluginManager attribute)
(fastr.core.interface.InterfaceResult attribute)
(fastr.core.interface.OutputSpec attribute)
(fastr.core.ioplugin.IOPlugin attribute)
(fastr.core.ioplugin.IOPluginManager attribute)
(fastr.core.link.Link attribute)
(fastr.core.network.Network attribute)
(fastr.core.networkmanager.NetworkManager attribute)
(fastr.core.node.AdvancedFlowNode attribute)
(fastr.core.node.ConstantNode attribute)
(fastr.core.node.DefaultInputGroupCombiner attribute)
(fastr.core.node.FlowNode attribute)
(fastr.core.node.InputDict attribute)
(fastr.core.node.InputGroup attribute)
(fastr.core.node.MacroNode attribute)
(fastr.core.node.MergingInputGroupCombiner attribute)
(fastr.core.node.Node attribute)
(fastr.core.node.OutputDict attribute)
(fastr.core.node.SinkNode attribute)
(fastr.core.node.SourceNode attribute)
(fastr.core.objectmanager.ObjectManager attribute)
(fastr.core.pluginmanager.BasePluginManager attribute)
(fastr.core.pluginmanager.LazyModule attribute)
(fastr.core.pluginmanager.PluginManager attribute)
(fastr.core.pluginmanager.PluginSubManager attribute)
(fastr.core.pluginmanager.PluginsView attribute)
(fastr.core.pluginmanager.plugin_option_type attribute)
(fastr.core.provenance.Provenance attribute)
(fastr.core.samples.HasSamples attribute)
(fastr.core.samples.SampleBaseId attribute)
(fastr.core.samples.SampleCollection attribute)
(fastr.core.samples.SampleId attribute)
(fastr.core.samples.SampleIndex attribute)
(fastr.core.samples.SampleItem attribute)
(fastr.core.samples.SampleItemBase attribute)
(fastr.core.samples.SamplePayload attribute)
(fastr.core.samples.SampleValue attribute)
(fastr.core.serializable.PassThroughSerializer attribute)
(fastr.core.serializable.Serializable attribute)
(fastr.core.target.DockerTarget attribute)
(fastr.core.target.LocalBinaryTarget attribute)
(fastr.core.target.ProcessUsageCollection attribute)
(fastr.core.target.SystemUsageInfo attribute)
(fastr.core.target.Target attribute)
(fastr.core.tool.Tool attribute)
(fastr.core.toolmanager.ToolManager attribute)
(fastr.core.updateable.Updateable attribute)
(fastr.core.updateable.UpdateableMeta attribute)
(fastr.core.version.Version attribute)
(fastr.datatypes.AnalyzeImageFile attribute)
(fastr.datatypes.AnyFile attribute)
(fastr.datatypes.AnyType attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.Boolean attribute)
(fastr.datatypes.DataType attribute)
(fastr.datatypes.Deferred attribute)
(fastr.datatypes.Directory attribute)
(fastr.datatypes.EnumType attribute)
(fastr.datatypes.Float attribute)
(fastr.datatypes.ITKImageFile attribute)
(fastr.datatypes.Int attribute)
(fastr.datatypes.MetaImageFile attribute)
(fastr.datatypes.NiftiImageFile attribute)
(fastr.datatypes.NiftiImageFileCompressed attribute)
(fastr.datatypes.NiftiImageFileUncompressed attribute)
(fastr.datatypes.Number attribute)
(fastr.datatypes.String attribute)
(fastr.datatypes.TifImageFile attribute)
(fastr.datatypes.TypeGroup attribute)
(fastr.datatypes.URLType attribute)
(fastr.datatypes.UnsignedInt attribute)
(fastr.datatypes.ValueType attribute)
(fastr.datatypes.__ioplugin__behaviour__Enum__ attribute)
(fastr.exceptions.FastrAttributeError attribute)
(fastr.exceptions.FastrCannotChangeAttributeError attribute)
(fastr.exceptions.FastrCardinalityError attribute)
(fastr.exceptions.FastrDataTypeFileNotReadable attribute)
(fastr.exceptions.FastrDataTypeMismatchError attribute)
(fastr.exceptions.FastrDataTypeNotAvailableError attribute)
(fastr.exceptions.FastrDataTypeNotInstantiableError attribute)
(fastr.exceptions.FastrDataTypeValueError attribute)
(fastr.exceptions.FastrError attribute)
(fastr.exceptions.FastrErrorInSubprocess attribute)
(fastr.exceptions.FastrExecutableNotFoundError attribute)
(fastr.exceptions.FastrExecutionError attribute)
(fastr.exceptions.FastrIOError attribute)
(fastr.exceptions.FastrImportError attribute)
(fastr.exceptions.FastrIndexError attribute)
(fastr.exceptions.FastrIndexNonexistent attribute)
(fastr.exceptions.FastrKeyError attribute)
(fastr.exceptions.FastrLookupError attribute)
(fastr.exceptions.FastrMountUnknownError attribute)
(fastr.exceptions.FastrNetworkMismatchError attribute)
(fastr.exceptions.FastrNetworkUnknownError attribute)
(fastr.exceptions.FastrNoValidTargetError attribute)
(fastr.exceptions.FastrNodeAreadyPreparedError attribute)
(fastr.exceptions.FastrNodeNotPreparedError attribute)
(fastr.exceptions.FastrNodeNotValidError attribute)
(fastr.exceptions.FastrNotExecutableError attribute)
(fastr.exceptions.FastrNotImplementedError attribute)
(fastr.exceptions.FastrOSError attribute)
(fastr.exceptions.FastrObjectUnknownError attribute)
(fastr.exceptions.FastrOptionalModuleNotAvailableError attribute)
(fastr.exceptions.FastrOutputValidationError attribute)
(fastr.exceptions.FastrParentMismatchError attribute)
(fastr.exceptions.FastrPluginNotAvailable attribute)
(fastr.exceptions.FastrPluginNotLoaded attribute)
(fastr.exceptions.FastrResultFileNotFound attribute)
(fastr.exceptions.FastrSerializationError attribute)
(fastr.exceptions.FastrSerializationIgnoreDefaultError attribute)
(fastr.exceptions.FastrSerializationInvalidDataError attribute)
(fastr.exceptions.FastrSerializationMethodError attribute)
(fastr.exceptions.FastrSinkDataUnavailableError attribute)
(fastr.exceptions.FastrSizeInvalidError attribute)
(fastr.exceptions.FastrSizeMismatchError attribute)
(fastr.exceptions.FastrSizeUnknownError attribute)
(fastr.exceptions.FastrSourceDataUnavailableError attribute)
(fastr.exceptions.FastrStateError attribute)
(fastr.exceptions.FastrSubprocessNotFinished attribute)
(fastr.exceptions.FastrToolNotAvailableError attribute)
(fastr.exceptions.FastrToolTargetNotFound attribute)
(fastr.exceptions.FastrToolUnknownError attribute)
(fastr.exceptions.FastrTypeError attribute)
(fastr.exceptions.FastrUnknownURLSchemeError attribute)
(fastr.exceptions.FastrValueError attribute)
(fastr.exceptions.FastrVersionInvalidError attribute)
(fastr.execution.environmentmodules.EnvironmentModules attribute)
(fastr.execution.executionpluginmanager.ExecutionPlugin attribute)
(fastr.execution.executionpluginmanager.ExecutionPluginManager attribute)
(fastr.execution.executionpluginmanager.JobAction attribute)
(fastr.execution.job.InlineJob attribute)
(fastr.execution.job.Job attribute)
(fastr.execution.job.JobState attribute)
(fastr.execution.job.SinkJob attribute)
(fastr.execution.job.SourceJob attribute)
(fastr.execution.networkanalyzer.DefaultNetworkAnalyzer attribute)
(fastr.execution.networkanalyzer.NetworkAnalyzer attribute)
(fastr.execution.networkchunker.DefaultNetworkChunker attribute)
(fastr.execution.networkchunker.NetworkChunker attribute)
(fastr.plugins.BlockingExecution attribute)
(fastr.plugins.CommaSeperatedValueFile attribute)
(fastr.plugins.CrossValidation attribute)
(fastr.plugins.DRMAAExecution attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FileSystem attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.plugins.LinearExecution attribute)
(fastr.plugins.NipypeInterface attribute)
(fastr.plugins.Null attribute)
(fastr.plugins.ProcessPoolExecution attribute)
(fastr.plugins.RQExecution attribute)
(fastr.plugins.Reference attribute)
(fastr.plugins.VirtualFileSystem attribute)
(fastr.plugins.VirtualFileSystemRegularExpression attribute)
(fastr.plugins.VirtualFileSystemValueList attribute)
(fastr.plugins.XNATStorage attribute)
(fastr.utils.classproperty.ClassPropertyDescriptor attribute)
(fastr.utils.jsonschemaparser.FastrRefResolver attribute)
(fastr.utils.schematotable.SchemaPrinter attribute)
(fastr.web.api.NetworkApi attribute)
(fastr.web.api.NetworkListApi attribute)
(fastr.web.api.ObjectUrl attribute)
(fastr.web.api.Run attribute)
(fastr.web.api.RunApi attribute)
(fastr.web.api.RunListApi attribute)
(fastr.web.api.StatusApi attribute)
(fastr.web.api.SubUrl attribute)
(fastr.web.api.ToolApi attribute)
(fastr.web.api.ToolListApi attribute)
__ne__() (fastr.__init__.Network method)
(fastr.core.network.Network method)
(fastr.datatypes.BaseDataType method)
__new__() (fastr.core.baseplugin.PluginState static method)
(fastr.core.interface.InputSpec static method)
(fastr.core.interface.OutputSpec static method)
(fastr.core.pluginmanager.plugin_option_type static method)
(fastr.core.samples.SampleBaseId static method)
(fastr.core.samples.SampleItem static method)
(fastr.core.samples.SampleItemBase static method)
(fastr.core.samples.SamplePayload static method)
(fastr.core.target.SystemUsageInfo static method)
(fastr.core.updateable.UpdateableMeta static method)
(fastr.core.version.Version static method)
(fastr.datatypes.TypeGroup static method)
(fastr.execution.executionpluginmanager.JobAction static method)
(fastr.execution.job.JobState static method)
__radd__() (fastr.configmanager.EmptyDefault method)
(fastr.core.samples.SampleBaseId method)
(fastr.core.samples.SampleValue method)
__reduce_ex__() (fastr.core.baseplugin.PluginState method)
(fastr.execution.executionpluginmanager.JobAction method)
(fastr.execution.job.JobState method)
__repr__() (fastr.__init__.Link method)
(fastr.__init__.Network method)
(fastr.__init__.Node method)
(fastr.configmanager.Config method)
(fastr.core.basemanager.BaseManager method)
(fastr.core.baseplugin.BasePlugin method)
(fastr.core.baseplugin.PluginMeta method)
(fastr.core.baseplugin.PluginState method)
(fastr.core.inputoutput.BaseInputOutput method)
(fastr.core.link.Link method)
(fastr.core.network.Network method)
(fastr.core.node.Node method)
(fastr.core.pluginmanager.LazyModule method)
(fastr.core.pluginmanager.plugin_option_type method)
(fastr.core.samples.SampleBaseId method)
(fastr.core.samples.SampleCollection method)
(fastr.core.samples.SampleIndex method)
(fastr.core.samples.SampleItemBase method)
(fastr.core.samples.SampleValue method)
(fastr.core.target.SystemUsageInfo method)
(fastr.core.tool.Tool method)
(fastr.core.version.Version method)
(fastr.datatypes.BaseDataType method)
(fastr.datatypes.Deferred method)
(fastr.exceptions.FastrSerializationError method)
(fastr.execution.executionpluginmanager.JobAction method)
(fastr.execution.job.Job method)
(fastr.execution.job.JobState method)
(fastr.execution.job.SinkJob method)
(fastr.execution.job.SourceJob method)
__schema_type__ (fastr.web.api.ObjectUrl attribute)
(fastr.web.api.SubUrl attribute)
__setitem__() (fastr.configmanager.EmptyDefault method)
(fastr.core.basemanager.BaseManager method)
(fastr.core.inputoutput.Input method)
(fastr.core.inputoutput.Output method)
(fastr.core.inputoutput.SourceOutput method)
(fastr.core.inputoutput.SubOutput method)
(fastr.core.node.InputDict method)
(fastr.core.node.InputGroup method)
(fastr.core.node.OutputDict method)
(fastr.core.pluginmanager.PluginManager method)
(fastr.core.pluginmanager.PluginsView method)
(fastr.core.samples.SampleCollection method)
(fastr.core.samples.SampleValue method)
__setstate__() (fastr.__init__.ConstantNode method)
(fastr.__init__.Link method)
(fastr.__init__.Network method)
(fastr.__init__.Node method)
(fastr.__init__.SourceNode method)
(fastr.core.inputoutput.BaseInputOutput method)
(fastr.core.inputoutput.Input method)
(fastr.core.inputoutput.Output method)
(fastr.core.inputoutput.SubInput method)
(fastr.core.inputoutput.SubOutput method)
(fastr.core.interface.Interface method)
(fastr.core.link.Link method)
(fastr.core.network.Network method)
(fastr.core.node.ConstantNode method)
(fastr.core.node.MacroNode method)
(fastr.core.node.Node method)
(fastr.core.node.SinkNode method)
(fastr.core.node.SourceNode method)
(fastr.core.samples.SampleValue method)
(fastr.core.tool.Tool method)
(fastr.core.updateable.Updateable method)
(fastr.datatypes.BaseDataType method)
(fastr.datatypes.Deferred method)
(fastr.execution.job.Job method)
(fastr.plugins.FastrInterface method)
(fastr.plugins.FlowInterface method)
(fastr.plugins.NipypeInterface method)
__slotnames__ (fastr.web.api.ObjectUrl attribute)
__slots__ (fastr.core.pluginmanager.plugin_option_type attribute)
(fastr.core.target.SystemUsageInfo attribute)
__str__() (fastr.__init__.Node method)
(fastr.core.baseplugin.BasePlugin method)
(fastr.core.baseplugin.PluginState method)
(fastr.core.inputoutput.Input method)
(fastr.core.inputoutput.Output method)
(fastr.core.inputoutput.SubInput method)
(fastr.core.inputoutput.SubOutput method)
(fastr.core.node.Node method)
(fastr.core.samples.SampleBaseId method)
(fastr.core.samples.SampleIndex method)
(fastr.core.tool.Tool method)
(fastr.core.version.Version method)
(fastr.datatypes.BaseDataType method)
(fastr.datatypes.Boolean method)
(fastr.exceptions.FastrError method)
(fastr.exceptions.FastrExecutableNotFoundError method)
(fastr.exceptions.FastrSerializationError method)
(fastr.execution.executionpluginmanager.JobAction method)
(fastr.execution.job.JobState method)
(fastr.utils.schematotable.SchemaPrinter method)
__updatefunc__() (fastr.core.node.InputGroup method)
(fastr.core.updateable.Updateable method)
__updateinprogress__ (fastr.core.updateable.Updateable attribute)
__updatetriggers__ (fastr.core.node.InputGroup attribute)
(fastr.core.updateable.Updateable attribute)
__updating__ (fastr.core.updateable.Updateable attribute)
__weakref__ (fastr.configmanager.Config attribute)
(fastr.configmanager.EmptyDefault attribute)
(fastr.core.baseplugin.BasePlugin attribute)
(fastr.core.dimension.Dimension attribute)
(fastr.core.dimension.HasDimensions attribute)
(fastr.core.interface.InterfaceResult attribute)
(fastr.core.node.DefaultInputGroupCombiner attribute)
(fastr.core.pluginmanager.LazyModule attribute)
(fastr.core.provenance.Provenance attribute)
(fastr.core.samples.HasSamples attribute)
(fastr.core.serializable.PassThroughSerializer attribute)
(fastr.core.serializable.Serializable attribute)
(fastr.core.target.Target attribute)
(fastr.core.updateable.Updateable attribute)
(fastr.exceptions.FastrError attribute)
(fastr.exceptions.FastrIOError attribute)
(fastr.exceptions.FastrOSError attribute)
(fastr.execution.environmentmodules.EnvironmentModules attribute)
(fastr.execution.networkanalyzer.NetworkAnalyzer attribute)
(fastr.execution.networkchunker.NetworkChunker attribute)
(fastr.utils.classproperty.ClassPropertyDescriptor attribute)
(fastr.utils.schematotable.SchemaPrinter attribute)
(fastr.web.api.Run attribute)
_item_extension() (fastr.core.basemanager.BaseManager method)
_load_item() (fastr.core.basemanager.BaseManager method)

A

abort() (fastr.__init__.Network method)
(fastr.core.network.Network method)
(fastr.web.api.Run method)
action() (fastr.datatypes.DataType method)
(fastr.datatypes.Directory method)
activity() (fastr.core.provenance.Provenance method)
add_link() (fastr.__init__.Network method)
(fastr.Network method)
(fastr.core.network.Network method)
add_node() (fastr.__init__.Network method)
(fastr.Network method)
(fastr.core.network.Network method)
add_stepid() (fastr.__init__.Network method)
(fastr.core.network.Network method)
AdvancedFlowNode (class in fastr.core.node)
AdvancedFlowOutput (class in fastr.core.inputoutput)
agent() (fastr.core.provenance.Provenance method)
aggregate() (fastr.core.target.ProcessUsageCollection method)
analyze_network() (fastr.execution.networkanalyzer.DefaultNetworkAnalyzer method)
(fastr.execution.networkanalyzer.NetworkAnalyzer method)
AnalyzeImageFile (class in fastr.datatypes)
any_of_draft4() (in module fastr.utils.jsonschemaparser)
AnyFile (class in fastr.datatypes)
AnyType (class in fastr.datatypes)
append() (fastr.configmanager.EmptyDefault method)
(fastr.core.inputoutput.Input method)
(fastr.core.target.ProcessUsageCollection method)
asdict() (fastr.configmanager.EmptyDefault method)
aslist() (fastr.configmanager.EmptyDefault method)
authors (fastr.core.tool.Tool attribute)
automatic (fastr.core.inputoutput.BaseOutput attribute)
avail() (fastr.execution.environmentmodules.EnvironmentModules method)
avail_modules (fastr.execution.environmentmodules.EnvironmentModules attribute)

B

BaseDataType (class in fastr.datatypes)
BaseInput (class in fastr.core.inputoutput)
BaseInputOutput (class in fastr.core.inputoutput)
BaseManager (class in fastr.core.basemanager)
basename() (in module fastr.data.url)
BaseOutput (class in fastr.core.inputoutput)
BasePlugin (class in fastr.core.baseplugin)
BasePluginManager (class in fastr.core.pluginmanager)
blocking (fastr.__init__.Node attribute)
(fastr.core.inputoutput.Output attribute)
(fastr.core.node.FlowNode attribute)
(fastr.core.node.Node attribute)
BlockingExecution (class in fastr.plugins)
Boolean (class in fastr.datatypes)
build (fastr.core.version.Version attribute)

C

calc_cardinality() (fastr.execution.job.Job static method)
calcmro() (fastr.core.updateable.UpdateableMeta class method)
call_subprocess() (fastr.core.target.LocalBinaryTarget method)
cancel (fastr.execution.executionpluginmanager.JobAction attribute)
cancel_job() (fastr.execution.executionpluginmanager.ExecutionPlugin method)
cancelled (fastr.execution.job.JobState attribute)
cardinality (fastr.core.samples.SampleItemBase attribute)
cardinality() (fastr.__init__.Link method)
(fastr.core.inputoutput.BaseInputOutput method)
(fastr.core.inputoutput.Input method)
(fastr.core.inputoutput.Output method)
(fastr.core.inputoutput.SourceOutput method)
(fastr.core.inputoutput.SubInput method)
(fastr.core.inputoutput.SubOutput method)
(fastr.core.link.Link method)
cardinality_from_nargs() (in module fastr.utils.cmd.extract_argparse)
cast() (fastr.core.samples.SampleValue method)
check_cardinality() (fastr.core.inputoutput.BaseInputOutput method)
check_finished() (fastr.plugins.RQExecution method)
check_id() (fastr.__init__.Network method)
(fastr.core.network.Network method)
check_input_id() (fastr.plugins.FastrInterface method)
check_job_requirements() (fastr.execution.executionpluginmanager.ExecutionPlugin method)
check_job_status() (fastr.execution.executionpluginmanager.ExecutionPlugin method)
check_output_id() (fastr.plugins.FastrInterface method)
checksum() (fastr.datatypes.BaseDataType method)
(fastr.datatypes.Deferred method)
(fastr.datatypes.MetaImageFile method)
(fastr.datatypes.URLType method)
(in module fastr.utils.checksum)
checksum_directory() (in module fastr.utils.checksum)
chunck_network() (fastr.execution.networkchunker.DefaultNetworkChunker method)
(fastr.execution.networkchunker.NetworkChunker method)
cite (fastr.core.tool.Tool attribute)
classproperty() (in module fastr.utils.classproperty)
ClassPropertyDescriptor (class in fastr.utils.classproperty)
cleanup() (fastr.core.baseplugin.BasePlugin method)
(fastr.core.ioplugin.IOPlugin method)
(fastr.core.ioplugin.IOPluginManager method)
(fastr.execution.executionpluginmanager.ExecutionPlugin method)
(fastr.plugins.BlockingExecution method)
(fastr.plugins.DRMAAExecution method)
(fastr.plugins.LinearExecution method)
(fastr.plugins.ProcessPoolExecution method)
(fastr.plugins.RQExecution method)
(fastr.plugins.XNATStorage method)
clear() (fastr.core.node.InputGroup method)
(fastr.execution.environmentmodules.EnvironmentModules method)
clear_version() (in module fastr.version)
collapse (fastr.__init__.Link attribute)
(fastr.core.link.Link attribute)
collapse_indexes (fastr.__init__.Link attribute)
(fastr.core.link.Link attribute)
collect_jobs() (fastr.plugins.DRMAAExecution method)
collect_results() (fastr.plugins.FastrInterface method)
collector_plugin_type (fastr.plugins.FastrInterface attribute)
collectors (fastr.plugins.FastrInterface attribute)
combine() (fastr.core.samples.SampleItemBase static method)
command (fastr.core.tool.Tool attribute)
COMMAND_DUMP (fastr.execution.job.Job attribute)
command_version (fastr.core.tool.Tool attribute)
commandfile (fastr.execution.job.Job attribute)
commandurl (fastr.execution.job.Job attribute)
CommaSeperatedValueFile (class in fastr.plugins)
compare_execution_dir() (in module fastr.utils.compare)
Config (class in fastr.configmanager)
configuration_fields (fastr.core.baseplugin.BasePlugin attribute)
(fastr.plugins.DRMAAExecution attribute)
(fastr.plugins.ProcessPoolExecution attribute)
(fastr.plugins.RQExecution attribute)
connect() (fastr.plugins.XNATStorage method)
ConstantNode (class in fastr)
(class in fastr.__init__), [1]
(class in fastr.core.node)
container (fastr.core.target.DockerTarget attribute)
content() (fastr.datatypes.AnalyzeImageFile class method)
(fastr.datatypes.MetaImageFile class method)
(fastr.datatypes.URLType class method)
copy_file_dir() (fastr.plugins.VirtualFileSystem static method)
cpu_percent (fastr.core.target.SystemUsageInfo attribute)
create_constant() (fastr.__init__.Network method)
(fastr.core.network.Network method)
create_enumtype() (fastr.core.datatypemanager.DataTypeManager method)
create_ioplugin_tool() (fastr.core.ioplugin.IOPluginManager static method)
create_job() (fastr.__init__.Node method)
(fastr.__init__.SourceNode method)
(fastr.core.node.Node method)
(fastr.core.node.SinkNode method)
(fastr.core.node.SourceNode method)
create_link() (fastr.__init__.Network method)
(fastr.Network method)
(fastr.core.network.Network method)
create_macro() (fastr.__init__.Network method)
(fastr.core.network.Network method)
create_macro_network() (in module fastr.examples.macro_node)
create_network() (in module fastr.examples.add_ints)
(in module fastr.examples.collapse)
(in module fastr.examples.collapse_expand)
(in module fastr.examples.cross_validation)
(in module fastr.examples.expand)
(in module fastr.examples.macro_node)
(in module fastr.examples.source_sink)
create_network_parser() (in module fastr.utils.cmd.run)
create_node() (fastr.__init__.Network method)
(fastr.Network method)
(fastr.core.network.Network method)
create_payload() (fastr.execution.job.Job method)
(fastr.execution.job.SinkJob method)
create_reference() (fastr.__init__.Network method)
(fastr.core.network.Network method)
create_rest_table() (in module fastr.utils.rest_generation)
create_sink() (fastr.__init__.Network method)
(fastr.Network method)
(fastr.core.network.Network method)
create_source() (fastr.__init__.Network method)
(fastr.Network method)
(fastr.core.network.Network method)
create_super_macro_node() (in module fastr.examples.macro_node)
create_vfs_url() (in module fastr.data.url)
created (fastr.execution.job.JobState attribute)
createobj() (fastr.__init__.Link class method)
(fastr.__init__.Node class method)
(fastr.core.link.Link class method)
(fastr.core.node.Node class method)
(fastr.core.serializable.Serializable class method)
CrossValidation (class in fastr.plugins)

D

data (fastr.__init__.ConstantNode attribute)
(fastr.core.basemanager.BaseManager attribute)
(fastr.core.node.ConstantNode attribute)
(fastr.core.pluginmanager.PluginSubManager attribute)
(fastr.core.samples.SampleItemBase attribute)
data_uri (fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.Deferred attribute)
DataType (class in fastr.datatypes)
datatype (fastr.__init__.SourceNode attribute)
(fastr.core.inputoutput.BaseInputOutput attribute)
(fastr.core.inputoutput.Input attribute)
(fastr.core.inputoutput.Output attribute)
(fastr.core.inputoutput.SubOutput attribute)
(fastr.core.node.SinkNode attribute)
(fastr.core.node.SourceNode attribute)
datatype_from_type() (in module fastr.utils.cmd.extract_argparse)
DataTypeManager (class in fastr.core.datatypemanager)
DEFAULT_FIELDS (fastr.configmanager.Config attribute)
DefaultInputGroupCombiner (class in fastr.core.node)
DefaultNetworkAnalyzer (class in fastr.execution.networkanalyzer)
DefaultNetworkChunker (class in fastr.execution.networkchunker)
Deferred (class in fastr.datatypes)
delete() (fastr.web.api.RunApi method)
descend() (fastr.utils.schematotable.SchemaPrinter method)
description (fastr.core.inputoutput.BaseInputOutput attribute)
(fastr.core.inputoutput.SubInput attribute)
(fastr.core.tool.Tool attribute)
(fastr.datatypes.AnalyzeImageFile attribute)
(fastr.datatypes.AnyFile attribute)
(fastr.datatypes.AnyType attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.Boolean attribute)
(fastr.datatypes.Directory attribute)
(fastr.datatypes.EnumType attribute)
(fastr.datatypes.Float attribute)
(fastr.datatypes.ITKImageFile attribute)
(fastr.datatypes.Int attribute)
(fastr.datatypes.MetaImageFile attribute)
(fastr.datatypes.NiftiImageFile attribute)
(fastr.datatypes.NiftiImageFileCompressed attribute)
(fastr.datatypes.NiftiImageFileUncompressed attribute)
(fastr.datatypes.Number attribute)
(fastr.datatypes.String attribute)
(fastr.datatypes.TifImageFile attribute)
(fastr.datatypes.UnsignedInt attribute)
destroy() (fastr.__init__.Link method)
(fastr.core.link.Link method)
dicteq() (in module fastr.utils.dicteq)
diffdict() (in module fastr.utils.dicteq)
diffobj() (in module fastr.utils.dicteq)
diffobj_str() (in module fastr.utils.dicteq)
Dimension (class in fastr.core.dimension)
dimensionality (fastr.core.samples.SampleItemBase attribute)
dimensions (fastr.core.dimension.HasDimensions attribute)
dimnames (fastr.__init__.Link attribute)
(fastr.__init__.Node attribute)
(fastr.__init__.SourceNode attribute)
(fastr.core.dimension.HasDimensions attribute)
(fastr.core.inputoutput.AdvancedFlowOutput attribute)
(fastr.core.inputoutput.Input attribute)
(fastr.core.inputoutput.Output attribute)
(fastr.core.inputoutput.SubInput attribute)
(fastr.core.link.Link attribute)
(fastr.core.node.DefaultInputGroupCombiner attribute)
(fastr.core.node.FlowNode attribute)
(fastr.core.node.InputGroup attribute)
(fastr.core.node.Node attribute)
(fastr.core.node.SourceNode attribute)
(fastr.core.samples.SampleCollection attribute)
dir_list() (in module fastr.utils.clear_pycs)
Directory (class in fastr.datatypes)
dirname() (in module fastr.data.url)
dirurl() (in module fastr.data.url)
doc() (in module fastr.web.views)
docker_api (fastr.core.target.DockerTarget attribute)
DockerTarget (class in fastr.core.target)
done (fastr.execution.job.JobState attribute)
draw_network() (fastr.__init__.Network method)
(fastr.Network method)
(fastr.core.network.Network method)
DRMAAExecution (class in fastr.plugins)
dump() (fastr.core.serializable.Serializable method)
(in module fastr.utils.xmltodict)
dumpf() (fastr.core.serializable.Serializable method)
dumpfuncs (fastr.core.serializable.Serializable attribute)
dumps() (fastr.core.serializable.PassThroughSerializer static method)
(fastr.core.serializable.Serializable method)
(in module fastr.utils.xmltodict)
DYNAMIC_LIBRARY_PATH_DICT (fastr.core.target.LocalBinaryTarget attribute)

E

empty (fastr.core.node.InputGroup attribute)
EmptyDefault (class in fastr.configmanager)
endpoint (fastr.web.api.NetworkApi attribute)
(fastr.web.api.NetworkListApi attribute)
(fastr.web.api.RunApi attribute)
(fastr.web.api.RunListApi attribute)
(fastr.web.api.StatusApi attribute)
(fastr.web.api.ToolApi attribute)
(fastr.web.api.ToolListApi attribute)
entity() (fastr.core.provenance.Provenance method)
EnumType (class in fastr.datatypes)
EnvironmentModules (class in fastr.execution.environmentmodules)
excerpt() (fastr.exceptions.FastrError method)
exec_worker() (fastr.plugins.LinearExecution method)
execute() (fastr.__init__.ConstantNode method)
(fastr.__init__.Network method)
(fastr.__init__.Node method)
(fastr.__init__.SourceNode method)
(fastr.core.interface.Interface method)
(fastr.core.network.Network method)
(fastr.core.node.AdvancedFlowNode method)
(fastr.core.node.ConstantNode method)
(fastr.core.node.MacroNode method)
(fastr.core.node.Node method)
(fastr.core.node.SinkNode method)
(fastr.core.node.SourceNode method)
(fastr.core.tool.Tool method)
(fastr.execution.job.Job method)
(fastr.plugins.CrossValidation static method)
(fastr.plugins.FastrInterface method)
(fastr.plugins.FlowInterface method)
(fastr.plugins.NipypeInterface method)
execute_job() (in module fastr.execution.executionscript)
execution_done (fastr.execution.job.JobState attribute)
execution_failed (fastr.execution.job.JobState attribute)
ExecutionPlugin (class in fastr.execution.executionpluginmanager)
ExecutionPluginManager (class in fastr.execution.executionpluginmanager)
expand (fastr.__init__.Link attribute)
(fastr.core.link.Link attribute)
expand() (fastr.core.samples.SampleIndex method)
expand_url() (fastr.core.ioplugin.IOPlugin method)
(fastr.core.ioplugin.IOPluginManager method)
(fastr.plugins.CommaSeperatedValueFile method)
(fastr.plugins.VirtualFileSystem method)
(fastr.plugins.VirtualFileSystemRegularExpression method)
(fastr.plugins.VirtualFileSystemValueList method)
(fastr.plugins.XNATStorage method)
expanding (fastr.core.interface.Interface attribute)
expanding() (fastr.plugins.FastrInterface method)
(fastr.plugins.FlowInterface method)
(fastr.plugins.NipypeInterface method)
extend() (fastr.configmanager.EmptyDefault method)
(in module fastr.utils.jsonschemaparser)
extension (fastr.datatypes.AnalyzeImageFile attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.Directory attribute)
(fastr.datatypes.MetaImageFile attribute)
(fastr.datatypes.NiftiImageFileCompressed attribute)
(fastr.datatypes.NiftiImageFileUncompressed attribute)
(fastr.datatypes.TifImageFile attribute)
extra (fastr.core.version.Version attribute)
extra_string (fastr.core.version.Version attribute)
extract_argparser() (in module fastr.utils.cmd.extract_argparse)

F

failed (fastr.core.baseplugin.PluginState attribute)
(fastr.execution.job.JobState attribute)
fastr.__init__ (module)
fastr.configmanager (module)
fastr.core (module)
fastr.core.basemanager (module)
fastr.core.baseplugin (module)
fastr.core.datatypemanager (module)
fastr.core.dimension (module)
fastr.core.inputoutput (module)
fastr.core.interface (module)
fastr.core.ioplugin (module)
fastr.core.link (module)
fastr.core.network (module)
fastr.core.networkmanager (module)
fastr.core.node (module)
fastr.core.objectmanager (module)
fastr.core.pluginmanager (module)
fastr.core.provenance (module)
fastr.core.samples (module)
fastr.core.serializable (module)
fastr.core.target (module)
fastr.core.test (module)
fastr.core.tool (module)
fastr.core.toolmanager (module)
fastr.core.updateable (module)
fastr.core.version (module)
fastr.core.vfs (module)
fastr.data (module)
fastr.data.url (module)
fastr.datatypes (module)
fastr.examples (module)
fastr.examples.add_ints (module)
fastr.examples.collapse (module)
fastr.examples.collapse_expand (module)
fastr.examples.cross_validation (module)
fastr.examples.expand (module)
fastr.examples.macro_node (module)
fastr.examples.source_sink (module)
fastr.exceptions (module)
fastr.execution (module)
fastr.execution.environmentmodules (module)
fastr.execution.executionpluginmanager (module)
fastr.execution.executionscript (module)
fastr.execution.job (module)
fastr.execution.networkanalyzer (module)
fastr.execution.networkchunker (module)
fastr.plugins (module)
fastr.resources (module)
fastr.utils (module)
fastr.utils.checksum (module)
fastr.utils.classproperty (module)
fastr.utils.clear_pycs (module)
fastr.utils.cmd (module)
fastr.utils.cmd.cat (module)
fastr.utils.cmd.execute (module)
fastr.utils.cmd.extract_argparse (module)
fastr.utils.cmd.prov (module)
fastr.utils.cmd.run (module)
fastr.utils.cmd.testtool (module)
fastr.utils.cmd.verify (module)
fastr.utils.cmd.webapp (module)
fastr.utils.compare (module)
fastr.utils.dicteq (module)
fastr.utils.gettools (module)
fastr.utils.iohelpers (module)
fastr.utils.jsonschemaparser (module)
fastr.utils.multiprocesswrapper (module)
fastr.utils.procutils (module)
fastr.utils.rest_generation (module)
fastr.utils.schematotable (module)
fastr.utils.sysinfo (module)
fastr.utils.verify (module)
fastr.utils.xmltodict (module)
fastr.version (module)
fastr.web (module)
fastr.web.api (module)
fastr.web.run (module)
fastr.web.views (module)
fastr_isinstance() (in module fastr.datatypes)
FastrAttributeError
FastrCannotChangeAttributeError
FastrCardinalityError
FastrDataTypeFileNotReadable
FastrDataTypeMismatchError
FastrDataTypeNotAvailableError
FastrDataTypeNotInstantiableError
FastrDataTypeValueError
FastrError
FastrErrorInSubprocess
FastrExecutableNotFoundError
FastrExecutionError
FastrImportError
FastrIndexError
FastrIndexNonexistent
FastrInterface (class in fastr.plugins)
FastrIOError
FastrKeyError
FastrLookupError
FastrMountUnknownError
FastrNetworkMismatchError
FastrNetworkUnknownError
FastrNodeAreadyPreparedError
FastrNodeNotPreparedError
FastrNodeNotValidError
FastrNotExecutableError
FastrNotImplementedError
FastrNoValidTargetError
FastrObjectUnknownError
FastrOptionalModuleNotAvailableError
FastrOSError
FastrOutputValidationError
FastrParentMismatchError
FastrPluginNotAvailable
FastrPluginNotLoaded
FastrRefResolver (class in fastr.utils.jsonschemaparser)
FastrResultFileNotFound
FastrSerializationError
FastrSerializationIgnoreDefaultError
FastrSerializationInvalidDataError
FastrSerializationMethodError
FastrSinkDataUnavailableError
FastrSizeInvalidError
FastrSizeMismatchError
FastrSizeUnknownError
FastrSourceDataUnavailableError
FastrStateError
FastrSubprocessNotFinished
FastrToolNotAvailableError
FastrToolTargetNotFound
FastrToolUnknownError
FastrTypeError
FastrUnknownURLSchemeError
FastrValueError
FastrVersionInvalidError
fetch_url() (fastr.core.ioplugin.IOPlugin method)
(fastr.plugins.FileSystem method)
(fastr.plugins.VirtualFileSystem method)
(fastr.plugins.XNATStorage method)
fetch_value() (fastr.core.ioplugin.IOPlugin method)
(fastr.plugins.FileSystem method)
(fastr.plugins.VirtualFileSystem method)
filename (fastr.core.pluginmanager.plugin_option_type attribute)
(fastr.datatypes.AnalyzeImageFile attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.Boolean attribute)
(fastr.datatypes.Directory attribute)
(fastr.datatypes.Float attribute)
(fastr.datatypes.ITKImageFile attribute)
(fastr.datatypes.Int attribute)
(fastr.datatypes.MetaImageFile attribute)
(fastr.datatypes.NiftiImageFile attribute)
(fastr.datatypes.NiftiImageFileCompressed attribute)
(fastr.datatypes.NiftiImageFileUncompressed attribute)
(fastr.datatypes.Number attribute)
(fastr.datatypes.String attribute)
(fastr.datatypes.TifImageFile attribute)
(fastr.datatypes.UnsignedInt attribute)
(fastr.plugins.BlockingExecution attribute)
(fastr.plugins.CommaSeperatedValueFile attribute)
(fastr.plugins.CrossValidation attribute)
(fastr.plugins.DRMAAExecution attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FileSystem attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.plugins.LinearExecution attribute)
(fastr.plugins.NipypeInterface attribute)
(fastr.plugins.Null attribute)
(fastr.plugins.ProcessPoolExecution attribute)
(fastr.plugins.RQExecution attribute)
(fastr.plugins.Reference attribute)
(fastr.plugins.VirtualFileSystemRegularExpression attribute)
(fastr.plugins.VirtualFileSystemValueList attribute)
(fastr.plugins.XNATStorage attribute)
FileSystem (class in fastr.plugins)
fill_output_argument() (fastr.execution.job.Job method)
filter_plugin() (fastr.core.pluginmanager.PluginsView method)
find_argparser() (in module fastr.utils.cmd.extract_argparse)
find_commands() (in module fastr.utils.cmd)
find_member() (fastr.core.updateable.UpdateableMeta class method)
find_source_index() (fastr.__init__.Node method)
(fastr.core.node.InputGroup class method)
(fastr.core.node.Node method)
finished (fastr.execution.job.JobState attribute)
Float (class in fastr.datatypes)
flow_plugin_type (fastr.plugins.FlowInterface attribute)
flow_plugins (fastr.plugins.FlowInterface attribute)
FlowInterface (class in fastr.plugins)
FlowNode (class in fastr.core.node)
format() (fastr.web.api.ObjectUrl method)
(fastr.web.api.SubUrl method)
from_schema() (fastr.utils.jsonschemaparser.FastrRefResolver class method)
full_split() (in module fastr.data.url)
fullid (fastr.__init__.Link attribute)
(fastr.__init__.Network attribute)
(fastr.__init__.Node attribute)
(fastr.core.baseplugin.BasePlugin attribute)
(fastr.core.datatypemanager.DataTypeManager attribute)
(fastr.core.inputoutput.BaseInputOutput attribute)
(fastr.core.inputoutput.Input attribute)
(fastr.core.inputoutput.Output attribute)
(fastr.core.inputoutput.SubInput attribute)
(fastr.core.inputoutput.SubOutput attribute)
(fastr.core.link.Link attribute)
(fastr.core.network.Network attribute)
(fastr.core.node.Node attribute)
(fastr.core.samples.SampleCollection attribute)
(fastr.core.tool.Tool attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.execution.job.Job attribute)
function_wrapper() (in module fastr.utils.multiprocesswrapper)

G

get() (fastr.web.api.NetworkApi method)
(fastr.web.api.NetworkListApi method)
(fastr.web.api.RunApi method)
(fastr.web.api.RunListApi method)
(fastr.web.api.StatusApi method)
(fastr.web.api.ToolApi method)
(fastr.web.api.ToolListApi method)
get_arguments() (fastr.plugins.FastrInterface method)
get_base_version() (in module fastr.version)
get_command_module() (in module fastr.utils.cmd)
get_cpu_usage() (in module fastr.utils.sysinfo)
get_drmaa_info() (in module fastr.utils.sysinfo)
get_hg_info() (in module fastr.version)
get_hostinfo() (in module fastr.utils.sysinfo)
get_job() (fastr.execution.executionpluginmanager.ExecutionPlugin method)
get_memory_usage() (in module fastr.utils.sysinfo)
get_mounts() (in module fastr.utils.sysinfo)
get_object_version() (fastr.core.networkmanager.NetworkManager method)
(fastr.core.objectmanager.ObjectManager method)
(fastr.core.toolmanager.ToolManager method)
get_os() (in module fastr.utils.sysinfo)
get_output_datatype() (fastr.execution.job.Job method)
(fastr.execution.job.SourceJob method)
get_parser() (in module fastr.utils.cmd.cat)
(in module fastr.utils.cmd.execute)
(in module fastr.utils.cmd.extract_argparse)
(in module fastr.utils.cmd.prov)
(in module fastr.utils.cmd.run)
(in module fastr.utils.cmd.testtool)
(in module fastr.utils.cmd.verify)
(in module fastr.utils.cmd.webapp)
get_path_from_url() (in module fastr.data.url)
get_processes() (in module fastr.utils.sysinfo)
get_prov_document() (in module fastr.utils.cmd.prov)
get_python() (in module fastr.utils.sysinfo)
get_result() (fastr.execution.job.InlineJob method)
(fastr.execution.job.Job method)
(fastr.execution.job.SinkJob method)
get_saved_version() (in module fastr.version)
get_serializer() (fastr.core.serializable.Serializable class method)
get_sourced_nodes() (fastr.__init__.Node method)
(fastr.core.inputoutput.Input method)
(fastr.core.inputoutput.SubInput method)
(fastr.core.node.Node method)
get_sourced_outputs() (fastr.core.inputoutput.Input method)
(fastr.core.inputoutput.SubInput method)
get_specials() (fastr.plugins.FastrInterface method)
get_status() (fastr.execution.executionpluginmanager.ExecutionPlugin method)
get_subinput() (fastr.core.inputoutput.Input method)
get_sysinfo() (in module fastr.utils.sysinfo)
get_type() (fastr.core.datatypemanager.DataTypeManager method)
(fastr.plugins.NipypeInterface method)
get_url_scheme() (in module fastr.data.url)
get_users() (in module fastr.utils.sysinfo)
get_value() (fastr.execution.job.Job class method)
getblueprinter() (in module fastr.utils.jsonschemaparser)
guess_type() (fastr.core.datatypemanager.DataTypeManager method)

H

has_type() (fastr.core.datatypemanager.DataTypeManager method)
HasDimensions (class in fastr.core.dimension)
hash (fastr.core.tool.Tool attribute)
hash_results() (fastr.execution.job.Job method)
hashsum() (in module fastr.utils.checksum)
HasSamples (class in fastr.core.samples)
help (fastr.core.tool.Tool attribute)
hold (fastr.execution.executionpluginmanager.JobAction attribute)
(fastr.execution.job.JobState attribute)

I

id (fastr.__init__.Network attribute)
(fastr.__init__.Node attribute)
(fastr.core.baseplugin.BasePlugin attribute)
(fastr.core.inputoutput.BaseInputOutput attribute)
(fastr.core.network.Network attribute)
(fastr.core.node.Node attribute)
(fastr.core.pluginmanager.plugin_option_type attribute)
(fastr.core.samples.SampleItemBase attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.execution.job.Job attribute)
id_ (fastr.core.node.Node attribute)
(fastr.Node attribute)
ids() (fastr.core.samples.HasSamples method)
in_progress (fastr.execution.job.JobState attribute)
index (fastr.core.samples.SampleItemBase attribute)
index() (fastr.core.inputoutput.Input method)
(in module fastr.web.views)
indexes() (fastr.core.samples.HasSamples method)
indexrep (fastr.core.inputoutput.SubOutput attribute)
InlineJob (class in fastr.execution.job)
Input (class in fastr.core.inputoutput)
input (fastr.core.node.SinkNode attribute)
input_group (fastr.core.inputoutput.Input attribute)
(fastr.core.inputoutput.SubInput attribute)
InputDict (class in fastr.core.node)
InputGroup (class in fastr.core.node)
inputgroups (fastr.__init__.Node attribute)
(fastr.Node attribute)
(fastr.core.node.Node attribute)
inputs (fastr.core.interface.Interface attribute)
(fastr.Node attribute)
(fastr.core.node.Node attribute)
(fastr.core.tool.Tool attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.plugins.NipypeInterface attribute)
InputSpec (class in fastr.core.interface)
InputSpecBase (in module fastr.core.interface)
insert() (fastr.core.inputoutput.Input method)
instantiate (fastr.core.baseplugin.BasePlugin attribute)
Int (class in fastr.datatypes)
Interface (class in fastr.core.interface)
interface_class (fastr.core.tool.Tool attribute)
InterfacePluginManager (class in fastr.core.interface)
InterfaceResult (class in fastr.core.interface)
IOPlugin (class in fastr.core.ioplugin)
IOPluginManager (class in fastr.core.ioplugin)
is_mapping (fastr.core.samples.SampleValue attribute)
is_sequence (fastr.core.samples.SampleValue attribute)
is_valid() (fastr.__init__.Network method)
(fastr.core.network.Network method)
isdatatype() (fastr.core.datatypemanager.DataTypeManager static method)
isinstance() (fastr.datatypes.BaseDataType class method)
(fastr.datatypes.TypeGroup class method)
isloaded() (fastr.execution.environmentmodules.EnvironmentModules method)
isslice (fastr.core.samples.SampleIndex attribute)
isurl() (fastr.core.ioplugin.IOPlugin static method)
(in module fastr.data.url)
items() (fastr.core.samples.HasSamples method)
items_prevalidate() (in module fastr.utils.jsonschemaparser)
iter_input_groups() (fastr.core.node.DefaultInputGroupCombiner method)
(fastr.core.node.MergingInputGroupCombiner method)
iterconvergingindices() (fastr.core.inputoutput.Output method)
iterelements() (fastr.core.samples.SampleValue method)
iterinputvalues (fastr.core.node.InputGroup attribute)
iteritems() (fastr.__init__.Link method)
(fastr.core.inputoutput.SubInput method)
(fastr.core.link.Link method)
(fastr.core.samples.HasSamples method)
itersubinputs() (fastr.core.inputoutput.BaseInput method)
(fastr.core.inputoutput.Input method)
(fastr.core.inputoutput.SubInput method)
ITKImageFile (class in fastr.datatypes)

J

Job (class in fastr.execution.job)
job (fastr.datatypes.Deferred attribute)
job_finished() (fastr.__init__.Network method)
(fastr.core.network.Network method)
(fastr.execution.executionpluginmanager.ExecutionPlugin method)
JobAction (class in fastr.execution.executionpluginmanager)
jobs (fastr.core.samples.SampleItemBase attribute)
JobState (class in fastr.execution.job)
join() (in module fastr.data.url)
json (in module fastr.plugins)

L

LazyModule (class in fastr.core.pluginmanager)
LinearExecution (class in fastr.plugins)
linearized (fastr.core.inputoutput.SourceOutput attribute)
Link (class in fastr)
(class in fastr.__init__), [1]
(class in fastr.core.link)
listeners (fastr.__init__.Node attribute)
(fastr.core.inputoutput.Output attribute)
(fastr.core.inputoutput.SubOutput attribute)
(fastr.core.node.Node attribute)
load() (fastr.core.serializable.Serializable class method)
(fastr.execution.environmentmodules.EnvironmentModules method)
(in module fastr.utils.xmltodict)
load_gpickle() (in module fastr.utils.iohelpers)
load_plugin() (fastr.core.pluginmanager.BasePluginManager method)
loaded (fastr.core.baseplugin.PluginState attribute)
loaded_modules (fastr.execution.environmentmodules.EnvironmentModules attribute)
loadf() (fastr.core.serializable.Serializable class method)
loads() (fastr.core.serializable.PassThroughSerializer static method)
(fastr.core.serializable.Serializable class method)
(in module fastr.utils.xmltodict)
LocalBinaryTarget (class in fastr.core.target)
logfile (fastr.execution.job.Job attribute)
logurl (fastr.execution.job.Job attribute)
lookup() (fastr.datatypes.Deferred class method)

M

MacroNode (class in fastr.core.node)
main() (in module fastr.core.ioplugin)
(in module fastr.examples.add_ints)
(in module fastr.examples.collapse)
(in module fastr.examples.collapse_expand)
(in module fastr.examples.cross_validation)
(in module fastr.examples.expand)
(in module fastr.examples.macro_node)
(in module fastr.examples.source_sink)
(in module fastr.execution.executionscript)
(in module fastr.utils.clear_pycs)
(in module fastr.utils.cmd)
(in module fastr.utils.cmd.cat)
(in module fastr.utils.cmd.execute)
(in module fastr.utils.cmd.extract_argparse)
(in module fastr.utils.cmd.prov)
(in module fastr.utils.cmd.run)
(in module fastr.utils.cmd.testtool)
(in module fastr.utils.cmd.verify)
(in module fastr.utils.cmd.webapp)
(in module fastr.utils.gettools)
(in module fastr.web.run)
major (fastr.core.version.Version attribute)
mapping_part() (fastr.core.samples.SampleValue method)
match_filename() (fastr.core.basemanager.BaseManager method)
match_types() (fastr.core.datatypemanager.DataTypeManager method)
match_types_any() (fastr.core.datatypemanager.DataTypeManager method)
md5_checksum() (in module fastr.utils.checksum)
mediatypes() (fastr.web.api.NetworkApi method)
(fastr.web.api.NetworkListApi method)
(fastr.web.api.RunApi method)
(fastr.web.api.RunListApi method)
(fastr.web.api.StatusApi method)
(fastr.web.api.ToolApi method)
(fastr.web.api.ToolListApi method)
merge() (fastr.core.node.DefaultInputGroupCombiner method)
(fastr.core.node.MergingInputGroupCombiner method)
merge_dimensions (fastr.__init__.Node attribute)
(fastr.core.node.Node attribute)
merge_payloads() (fastr.core.node.DefaultInputGroupCombiner method)
merge_sample_data() (fastr.core.node.DefaultInputGroupCombiner method)
merge_sample_id() (fastr.core.node.DefaultInputGroupCombiner method)
merge_sample_index() (fastr.core.node.DefaultInputGroupCombiner method)
merge_sample_jobs() (fastr.core.node.DefaultInputGroupCombiner method)
MergingInputGroupCombiner (class in fastr.core.node)
messages (fastr.core.updateable.Updateable attribute)
MetaImageFile (class in fastr.datatypes)
methods (fastr.web.api.NetworkApi attribute)
(fastr.web.api.NetworkListApi attribute)
(fastr.web.api.RunApi attribute)
(fastr.web.api.RunListApi attribute)
(fastr.web.api.StatusApi attribute)
(fastr.web.api.ToolApi attribute)
(fastr.web.api.ToolListApi attribute)
minor (fastr.core.version.Version attribute)
module (fastr.core.baseplugin.BasePlugin attribute)
(fastr.datatypes.AnalyzeImageFile attribute)
(fastr.datatypes.Boolean attribute)
(fastr.datatypes.Directory attribute)
(fastr.datatypes.Float attribute)
(fastr.datatypes.ITKImageFile attribute)
(fastr.datatypes.Int attribute)
(fastr.datatypes.MetaImageFile attribute)
(fastr.datatypes.NiftiImageFile attribute)
(fastr.datatypes.NiftiImageFileCompressed attribute)
(fastr.datatypes.NiftiImageFileUncompressed attribute)
(fastr.datatypes.Number attribute)
(fastr.datatypes.String attribute)
(fastr.datatypes.TifImageFile attribute)
(fastr.datatypes.UnsignedInt attribute)
(fastr.plugins.BlockingExecution attribute)
(fastr.plugins.CommaSeperatedValueFile attribute)
(fastr.plugins.CrossValidation attribute)
(fastr.plugins.DRMAAExecution attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FileSystem attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.plugins.LinearExecution attribute)
(fastr.plugins.NipypeInterface attribute)
(fastr.plugins.Null attribute)
(fastr.plugins.ProcessPoolExecution attribute)
(fastr.plugins.RQExecution attribute)
(fastr.plugins.Reference attribute)
(fastr.plugins.VirtualFileSystemRegularExpression attribute)
(fastr.plugins.VirtualFileSystemValueList attribute)
(fastr.plugins.XNATStorage attribute)
monitor_docker() (fastr.core.target.DockerTarget method)
monitor_process() (fastr.core.target.LocalBinaryTarget method)

N

name (fastr.__init__.Node attribute)
(fastr.ConstantNode attribute)
(fastr.Node attribute)
(fastr.SinkNode attribute)
(fastr.SourceNode attribute)
(fastr.core.node.Node attribute)
(fastr.core.pluginmanager.plugin_option_type attribute)
(fastr.core.tool.Tool attribute)
(fastr.datatypes.BaseDataType attribute)
namedtuple_to_dict() (in module fastr.utils.sysinfo)
namespace (fastr.core.pluginmanager.plugin_option_type attribute)
(fastr.core.tool.Tool attribute)
ndims (fastr.core.inputoutput.Output attribute)
(fastr.core.inputoutput.SourceOutput attribute)
(fastr.core.samples.SampleCollection attribute)
Network (class in fastr)
(class in fastr.__init__), [1]
(class in fastr.core.network)
network() (in module fastr.web.views)
NETWORK_DUMP_FILE_NAME (fastr.__init__.Network attribute)
(fastr.core.network.Network attribute)
network_lock_thread() (in module fastr.web.api)
network_runner() (in module fastr.web.api)
NetworkAnalyzer (class in fastr.execution.networkanalyzer)
NetworkApi (class in fastr.web.api)
NetworkChunker (class in fastr.execution.networkchunker)
networklist (in module fastr.core.networkmanager)
NetworkListApi (class in fastr.web.api)
NetworkManager (class in fastr.core.networkmanager)
networks() (in module fastr.web.views)
NiftiImageFile (class in fastr.datatypes)
NiftiImageFileCompressed (class in fastr.datatypes)
NiftiImageFileUncompressed (class in fastr.datatypes)
NipypeInterface (class in fastr.plugins)
Node (class in fastr)
(class in fastr.__init__), [1]
(class in fastr.core.node)
node (fastr.core.inputoutput.BaseInputOutput attribute)
(fastr.core.inputoutput.SubInput attribute)
(fastr.core.inputoutput.SubOutput attribute)
node_class (fastr.core.tool.Tool attribute)
nodegroup (fastr.__init__.Node attribute)
(fastr.core.node.Node attribute)
nonexistent (fastr.execution.job.JobState attribute)
normurl() (in module fastr.data.url)
not_draft4() (in module fastr.utils.jsonschemaparser)
ns_id (fastr.core.tool.Tool attribute)
Null (class in fastr.plugins)
num_subinput (fastr.core.inputoutput.BaseInput attribute)
(fastr.core.inputoutput.Input attribute)
(fastr.core.inputoutput.SubInput attribute)
Number (class in fastr.datatypes)
numel (fastr.core.inputoutput.BaseInputOutput attribute)

O

object_class (fastr.core.networkmanager.NetworkManager attribute)
(fastr.core.objectmanager.ObjectManager attribute)
(fastr.core.toolmanager.ToolManager attribute)
ObjectManager (class in fastr.core.objectmanager)
ObjectUrl (class in fastr.web.api)
objectversions() (fastr.core.objectmanager.ObjectManager method)
one_of_draft4() (in module fastr.utils.jsonschemaparser)
open_url() (in module fastr.utils.cmd.webapp)
options (fastr.datatypes.EnumType attribute)
Output (class in fastr.core.inputoutput)
output (fastr.__init__.SourceNode attribute)
(fastr.core.node.SourceNode attribute)
OutputDict (class in fastr.core.node)
outputs (fastr.core.interface.Interface attribute)
(fastr.Node attribute)
(fastr.core.node.Node attribute)
(fastr.core.tool.Tool attribute)
(fastr.plugins.FastrInterface attribute)
(fastr.plugins.FlowInterface attribute)
(fastr.plugins.NipypeInterface attribute)
outputsize (fastr.__init__.Node attribute)
(fastr.__init__.SourceNode attribute)
(fastr.core.node.DefaultInputGroupCombiner attribute)
(fastr.core.node.FlowNode attribute)
(fastr.core.node.Node attribute)
(fastr.core.node.SourceNode attribute)
OutputSpec (class in fastr.core.interface)
OutputSpecBase (in module fastr.core.interface)

P

parent (fastr.__init__.Link attribute)
(fastr.__init__.Node attribute)
(fastr.core.link.Link attribute)
(fastr.core.node.InputGroup attribute)
(fastr.core.node.Node attribute)
(fastr.core.samples.SampleCollection attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.__ioplugin__behaviour__Enum__ attribute)
parse() (fastr.utils.schematotable.SchemaPrinter method)
parsed_value (fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.URLType attribute)
PassThroughSerializer (class in fastr.core.serializable)
path (fastr.core.tool.Tool attribute)
(in module fastr.plugins)
path_to_url() (fastr.core.ioplugin.IOPlugin method)
(fastr.plugins.FileSystem method)
(fastr.plugins.VirtualFileSystem method)
pattern_properties_prevalid() (in module fastr.utils.jsonschemaparser)
Plugin (class in fastr.core.baseplugin)
plugin_class (fastr.core.datatypemanager.DataTypeManager attribute)
(fastr.core.interface.InterfacePluginManager attribute)
(fastr.core.ioplugin.IOPluginManager attribute)
(fastr.core.pluginmanager.BasePluginManager attribute)
(fastr.core.pluginmanager.PluginManager attribute)
(fastr.core.pluginmanager.PluginSubManager attribute)
(fastr.execution.executionpluginmanager.ExecutionPluginManager attribute)
plugin_option_type (class in fastr.core.pluginmanager)
PluginManager (class in fastr.core.pluginmanager)
PluginMeta (class in fastr.core.baseplugin)
PluginState (class in fastr.core.baseplugin)
PluginSubManager (class in fastr.core.pluginmanager)
PluginsView (class in fastr.core.pluginmanager)
poll_datatype() (fastr.core.datatypemanager.DataTypeManager method)
pop() (fastr.core.node.InputGroup method)
popitem() (fastr.core.node.InputGroup method)
populate() (fastr.core.basemanager.BaseManager method)
(fastr.core.datatypemanager.DataTypeManager method)
(fastr.core.ioplugin.IOPluginManager method)
(fastr.core.pluginmanager.BasePluginManager method)
(fastr.core.toolmanager.ToolManager method)
post() (fastr.web.api.RunListApi method)
preferred_types (fastr.core.inputoutput.Output attribute)
(fastr.core.inputoutput.SubOutput attribute)
preload (fastr.core.baseplugin.PluginState attribute)
prepare() (fastr.__init__.Node method)
(fastr.core.inputoutput.Input method)
(fastr.core.inputoutput.Output method)
(fastr.core.node.Node method)
prepend() (fastr.configmanager.EmptyDefault method)
primary (fastr.core.node.InputGroup attribute)
print_help() (in module fastr.utils.cmd)
print_result() (fastr.core.ioplugin.IOPlugin static method)
printlines() (fastr.utils.schematotable.SchemaPrinter method)
processing_callback (fastr.execution.job.JobState attribute)
ProcessPoolExecution (class in fastr.plugins)
ProcessUsageCollection (class in fastr.core.target)
properties_postvalidate() (in module fastr.utils.jsonschemaparser)
properties_prevalidate() (in module fastr.utils.jsonschemaparser)
prov() (in module fastr.web.views)
Provenance (class in fastr.core.provenance)
provenance (fastr.datatypes.Deferred attribute)
pull_source_data() (fastr.core.ioplugin.IOPlugin method)
(fastr.core.ioplugin.IOPluginManager method)
push_sink_data() (fastr.core.ioplugin.IOPlugin method)
(fastr.plugins.Reference method)
put_url() (fastr.core.ioplugin.IOPlugin method)
(fastr.core.ioplugin.IOPluginManager method)
(fastr.plugins.FileSystem method)
(fastr.plugins.Null method)
(fastr.plugins.VirtualFileSystem method)
(fastr.plugins.XNATStorage method)
put_value() (fastr.core.ioplugin.IOPlugin method)
(fastr.plugins.FileSystem method)
(fastr.plugins.Null method)
(fastr.plugins.VirtualFileSystem method)
Python Enhancement Proposals
PEP 8, [1]
PEP 8#class-names
PEP 8#global-variable-names
PEP 8#method-names-and-instance-variables
PEP 8#package-and-module-names
PEP 8#prescriptive-naming-conventions

Q

queue (fastr.execution.executionpluginmanager.JobAction attribute)
queue_job() (fastr.execution.executionpluginmanager.ExecutionPlugin method)
queued (fastr.execution.job.JobState attribute)

R

raw_value (fastr.datatypes.BaseDataType attribute)
read_bytes (fastr.core.target.SystemUsageInfo attribute)
read_config() (fastr.configmanager.Config method)
read_config_files (fastr.configmanager.Config attribute)
readfastrschema() (fastr.utils.jsonschemaparser.FastrRefResolver static method)
readfile() (fastr.utils.jsonschemaparser.FastrRefResolver static method)
ready (fastr.core.updateable.Updateable attribute)
Reference (class in fastr.plugins)
references (fastr.core.tool.Tool attribute)
regex (fastr.core.tool.Tool attribute)
register_configuration() (fastr.core.baseplugin.BasePlugin class method)
register_fields() (fastr.configmanager.Config method)
register_url_scheme() (fastr.core.ioplugin.IOPluginManager static method)
(in module fastr.data.url)
release_job() (fastr.execution.executionpluginmanager.ExecutionPlugin method)
reload() (fastr.core.basemanager.BaseManager method)
(fastr.execution.environmentmodules.EnvironmentModules method)
remove() (fastr.__init__.Network method)
(fastr.core.inputoutput.Input method)
(fastr.core.inputoutput.SubInput method)
(fastr.core.network.Network method)
request_parser (fastr.web.api.RunListApi attribute)
required (fastr.core.inputoutput.BaseInputOutput attribute)
required_cores (fastr.__init__.Node attribute)
(fastr.core.node.Node attribute)
(fastr.execution.job.Job attribute)
required_memory (fastr.__init__.Node attribute)
(fastr.core.node.Node attribute)
(fastr.execution.job.Job attribute)
required_time (fastr.__init__.Node attribute)
(fastr.core.node.Node attribute)
(fastr.execution.job.Job attribute)
requirements (fastr.core.tool.Tool attribute)
RESULT_DUMP (fastr.execution.job.Job attribute)
resulting_datatype (fastr.core.inputoutput.Output attribute)
(fastr.core.inputoutput.SubOutput attribute)
rmem (fastr.core.target.SystemUsageInfo attribute)
RQExecution (class in fastr.plugins)
Run (class in fastr.web.api)
run_command() (fastr.core.target.DockerTarget method)
(fastr.core.target.LocalBinaryTarget method)
(fastr.core.target.Target method)
run_job() (fastr.plugins.RQExecution class method)
run_network() (fastr.web.api.Run method)
RunApi (class in fastr.web.api)
runapp() (in module fastr.web.run)
RunListApi (class in fastr.web.api)
running (fastr.execution.job.JobState attribute)

S

SampleBaseId (class in fastr.core.samples)
SampleCollection (class in fastr.core.samples)
SampleId (class in fastr.core.samples)
SampleIndex (class in fastr.core.samples)
SampleItem (class in fastr.core.samples)
SampleItemBase (class in fastr.core.samples)
SamplePayload (class in fastr.core.samples)
samples (fastr.core.inputoutput.Output attribute)
(fastr.core.inputoutput.SubOutput attribute)
SampleValue (class in fastr.core.samples)
save_gpickle() (in module fastr.utils.iohelpers)
save_version() (in module fastr.version)
SchemaPrinter (class in fastr.utils.schematotable)
scheme (fastr.core.ioplugin.IOPlugin attribute)
(fastr.plugins.CommaSeperatedValueFile attribute)
(fastr.plugins.FileSystem attribute)
(fastr.plugins.Null attribute)
(fastr.plugins.Reference attribute)
(fastr.plugins.VirtualFileSystem attribute)
(fastr.plugins.VirtualFileSystemRegularExpression attribute)
(fastr.plugins.VirtualFileSystemValueList attribute)
(fastr.plugins.XNATStorage attribute)
send_job() (fastr.plugins.DRMAAExecution method)
sequence_part() (fastr.core.samples.SampleValue method)
Serializable (class in fastr.core.serializable)
SERIALIZERS (fastr.core.serializable.Serializable attribute)
server (fastr.plugins.XNATStorage attribute)
set_code() (fastr.core.baseplugin.BasePlugin class method)
set_data() (fastr.__init__.ConstantNode method)
(fastr.__init__.SourceNode method)
(fastr.core.node.ConstantNode method)
(fastr.core.node.SinkNode method)
(fastr.core.node.SourceNode method)
set_result() (fastr.__init__.Node method)
(fastr.core.node.AdvancedFlowNode method)
(fastr.core.node.FlowNode method)
(fastr.core.node.Node method)
set_status() (fastr.core.baseplugin.BasePlugin class method)
set_subinput() (fastr.core.inputoutput.Input method)
setdefault() (fastr.core.node.InputGroup method)
setup() (fastr.core.ioplugin.IOPlugin method)
(fastr.plugins.VirtualFileSystem method)
sha1_checksum() (in module fastr.utils.checksum)
show_jobs() (fastr.execution.executionpluginmanager.ExecutionPlugin method)
shutdown() (in module fastr.web.views)
shutdown_server() (in module fastr.web.views)
sink_data() (in module fastr.examples.add_ints)
(in module fastr.examples.collapse)
(in module fastr.examples.collapse_expand)
(in module fastr.examples.cross_validation)
(in module fastr.examples.expand)
(in module fastr.examples.macro_node)
(in module fastr.examples.source_sink)
SinkJob (class in fastr.execution.job)
SinkNode (class in fastr)
(class in fastr.__init__)
(class in fastr.core.node)
size (fastr.__init__.Link attribute)
(fastr.core.dimension.HasDimensions attribute)
(fastr.core.inputoutput.BaseInputOutput attribute)
(fastr.core.inputoutput.Input attribute)
(fastr.core.inputoutput.Output attribute)
(fastr.core.inputoutput.SourceOutput attribute)
(fastr.core.inputoutput.SubInput attribute)
(fastr.core.link.Link attribute)
(fastr.core.node.InputGroup attribute)
(fastr.core.samples.HasSamples attribute)
(fastr.core.samples.SampleCollection attribute)
solve_broadcast() (fastr.core.node.InputGroup class method)
source (fastr.__init__.Link attribute)
(fastr.Link attribute)
(fastr.core.inputoutput.Input attribute)
(fastr.core.inputoutput.SubInput attribute)
(fastr.core.link.Link attribute)
source_data() (in module fastr.examples.add_ints)
(in module fastr.examples.collapse)
(in module fastr.examples.collapse_expand)
(in module fastr.examples.cross_validation)
(in module fastr.examples.expand)
(in module fastr.examples.macro_node)
(in module fastr.examples.source_sink)
SOURCE_DUMP_FILE_NAME (fastr.__init__.Network attribute)
(fastr.core.network.Network attribute)
source_output (fastr.core.inputoutput.SubInput attribute)
sourcegroup (fastr.__init__.SourceNode attribute)
(fastr.core.node.SourceNode attribute)
SourceJob (class in fastr.execution.job)
SourceNode (class in fastr)
(class in fastr.__init__), [1]
(class in fastr.core.node)
SourceOutput (class in fastr.core.inputoutput)
split() (in module fastr.data.url)
status (fastr.__init__.Link attribute)
(fastr.__init__.Node attribute)
(fastr.core.baseplugin.BasePlugin attribute)
(fastr.core.link.Link attribute)
(fastr.core.node.Node attribute)
(fastr.core.version.Version attribute)
(fastr.execution.job.Job attribute)
status() (fastr.web.api.Run method)
status_message (fastr.core.baseplugin.BasePlugin attribute)
StatusApi (class in fastr.web.api)
STDERR_DUMP (fastr.execution.job.Job attribute)
stderrfile (fastr.execution.job.Job attribute)
stderrurl (fastr.execution.job.Job attribute)
stdout (in module fastr.plugins)
STDOUT_DUMP (fastr.execution.job.Job attribute)
stdoutfile (fastr.execution.job.Job attribute)
stdouturl (fastr.execution.job.Job attribute)
String (class in fastr.datatypes)
SubInput (class in fastr.core.inputoutput)
submit_jobs() (fastr.plugins.DRMAAExecution method)
SubOutput (class in fastr.core.inputoutput)
substitute() (fastr.execution.job.SinkJob method)
SubUrl (class in fastr.web.api)
suffix (fastr.core.version.Version attribute)
swap() (fastr.execution.environmentmodules.EnvironmentModules method)
sync() (fastr.execution.environmentmodules.EnvironmentModules method)
SystemUsageInfo (class in fastr.core.target)

T

tags (fastr.core.tool.Tool attribute)
Target (class in fastr.core.target)
target (fastr.__init__.Link attribute)
(fastr.Link attribute)
(fastr.core.link.Link attribute)
(fastr.core.tool.Tool attribute)
(fastr.datatypes.Deferred attribute)
test() (fastr.__init__.Network method)
(fastr.core.baseplugin.BasePlugin class method)
(fastr.core.interface.Interface class method)
(fastr.core.network.Network method)
(fastr.core.tool.Tool method)
(fastr.datatypes.BaseDataType class method)
(fastr.plugins.NipypeInterface class method)
(fastr.plugins.ProcessPoolExecution class method)
test_spec (fastr.core.tool.Tool attribute)
tests (fastr.core.tool.Tool attribute)
TifImageFile (class in fastr.datatypes)
timestamp (fastr.core.target.SystemUsageInfo attribute)
todict() (fastr.core.objectmanager.ObjectManager method)
Tool (class in fastr.core.tool)
tool (fastr.__init__.Node attribute)
(fastr.core.node.Node attribute)
(fastr.execution.job.Job attribute)
tool() (in module fastr.web.views)
ToolApi (class in fastr.web.api)
toollist (fastr attribute)
(in module fastr.__init__)
(in module fastr.core.toolmanager)
ToolListApi (class in fastr.web.api)
ToolManager (class in fastr.core.toolmanager)
toolversions() (fastr.core.toolmanager.ToolManager method)
tostring_modvalue() (fastr.execution.environmentmodules.EnvironmentModules static method)
totuple_modvalue() (fastr.execution.environmentmodules.EnvironmentModules static method)
translate_argument() (fastr.execution.job.Job method)
translate_results() (fastr.execution.job.Job method)
TypeGroup (class in fastr.datatypes)
typelist (fastr attribute)
(in module fastr.__init__)

U

uninitialized (fastr.core.baseplugin.PluginState attribute)
unload() (fastr.execution.environmentmodules.EnvironmentModules method)
unloaded (fastr.core.baseplugin.PluginState attribute)
unmerge() (fastr.core.node.DefaultInputGroupCombiner method)
(fastr.core.node.MergingInputGroupCombiner method)
UnsignedInt (class in fastr.datatypes)
update() (fastr.configmanager.EmptyDefault method)
(fastr.core.node.DefaultInputGroupCombiner method)
(fastr.core.node.InputGroup method)
(fastr.core.node.MergingInputGroupCombiner method)
(fastr.core.updateable.Updateable method)
update_inputgroups() (fastr.__init__.Node method)
(fastr.core.node.Node method)
update_job_result() (in module fastr.web.api)
update_status() (in module fastr.web.api)
Updateable (class in fastr.core.updateable)
UpdateableMeta (class in fastr.core.updateable)
updatetrigger() (fastr.core.updateable.UpdateableMeta static method)
url (fastr.core.tool.Tool attribute)
url_to_path() (fastr.core.ioplugin.IOPlugin method)
(fastr.core.ioplugin.IOPluginManager method)
(fastr.plugins.FileSystem method)
(fastr.plugins.VirtualFileSystem method)
URLType (class in fastr.datatypes)
usage_type (fastr.core.target.ProcessUsageCollection attribute)

V

valid (fastr.__init__.SourceNode attribute)
(fastr.core.inputoutput.Output attribute)
(fastr.core.node.SourceNode attribute)
(fastr.core.updateable.Updateable attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.URLType attribute)
validate_results() (fastr.execution.job.Job method)
(fastr.execution.job.SinkJob method)
(fastr.execution.job.SourceJob method)
value (fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.Boolean attribute)
(fastr.datatypes.Deferred attribute)
(fastr.datatypes.Float attribute)
(fastr.datatypes.Int attribute)
(fastr.datatypes.UnsignedInt attribute)
ValueType (class in fastr.datatypes)
verify_resource_loading() (in module fastr.utils.verify)
verify_tool() (in module fastr.utils.verify)
Version (class in fastr.core.version)
version (fastr.core.tool.Tool attribute)
(fastr.datatypes.BaseDataType attribute)
(fastr.datatypes.EnumType attribute)
version_matcher (fastr.core.version.Version attribute)
VirtualFileSystem (class in fastr.plugins)
VirtualFileSystemRegularExpression (class in fastr.plugins)
VirtualFileSystemValueList (class in fastr.plugins)
vmem (fastr.core.target.SystemUsageInfo attribute)

W

web_url() (fastr.configmanager.Config method)
websocket_client() (in module fastr.web.views)
which() (in module fastr.utils.procutils)
write() (fastr.execution.job.Job method)
write_bytes (fastr.core.target.SystemUsageInfo attribute)

X

x (fastr.configmanager.Config attribute)
xnat (fastr.plugins.XNATStorage attribute)
XNATStorage (class in fastr.plugins)